A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines

Detalhes bibliográficos
Autor(a) principal: Nascimento,Leandro Costa do
Data de Publicação: 2012
Outros Autores: Costa,Gustavo Gilson Lacerda, Binneck,Eliseu, Pereira,Gonçalo Amarante Guimarães, Carazzolle,Marcelo Falsarella
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Genetics and Molecular Biology
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000200002
Resumo: The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression.
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spelling A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelinesbioinformaticsdatabasegene expressionsoybeanGenosojaThe Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression.Sociedade Brasileira de Genética2012-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000200002Genetics and Molecular Biology v.35 n.1 suppl.1 2012reponame:Genetics and Molecular Biologyinstname:Sociedade Brasileira de Genética (SBG)instacron:SBG10.1590/S1415-47572012000200002info:eu-repo/semantics/openAccessNascimento,Leandro Costa doCosta,Gustavo Gilson LacerdaBinneck,EliseuPereira,Gonçalo Amarante GuimarãesCarazzolle,Marcelo Falsarellaeng2012-06-01T00:00:00Zoai:scielo:S1415-47572012000200002Revistahttp://www.gmb.org.br/ONGhttps://old.scielo.br/oai/scielo-oai.php||editor@gmb.org.br1678-46851415-4757opendoar:2012-06-01T00:00Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)false
dc.title.none.fl_str_mv A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines
title A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines
spellingShingle A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines
Nascimento,Leandro Costa do
bioinformatics
database
gene expression
soybean
Genosoja
title_short A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines
title_full A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines
title_fullStr A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines
title_full_unstemmed A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines
title_sort A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines
author Nascimento,Leandro Costa do
author_facet Nascimento,Leandro Costa do
Costa,Gustavo Gilson Lacerda
Binneck,Eliseu
Pereira,Gonçalo Amarante Guimarães
Carazzolle,Marcelo Falsarella
author_role author
author2 Costa,Gustavo Gilson Lacerda
Binneck,Eliseu
Pereira,Gonçalo Amarante Guimarães
Carazzolle,Marcelo Falsarella
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Nascimento,Leandro Costa do
Costa,Gustavo Gilson Lacerda
Binneck,Eliseu
Pereira,Gonçalo Amarante Guimarães
Carazzolle,Marcelo Falsarella
dc.subject.por.fl_str_mv bioinformatics
database
gene expression
soybean
Genosoja
topic bioinformatics
database
gene expression
soybean
Genosoja
description The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression.
publishDate 2012
dc.date.none.fl_str_mv 2012-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000200002
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000200002
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/S1415-47572012000200002
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Genética
publisher.none.fl_str_mv Sociedade Brasileira de Genética
dc.source.none.fl_str_mv Genetics and Molecular Biology v.35 n.1 suppl.1 2012
reponame:Genetics and Molecular Biology
instname:Sociedade Brasileira de Genética (SBG)
instacron:SBG
instname_str Sociedade Brasileira de Genética (SBG)
instacron_str SBG
institution SBG
reponame_str Genetics and Molecular Biology
collection Genetics and Molecular Biology
repository.name.fl_str_mv Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)
repository.mail.fl_str_mv ||editor@gmb.org.br
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