A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines
Autor(a) principal: | |
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Data de Publicação: | 2012 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Genetics and Molecular Biology |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000200002 |
Resumo: | The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression. |
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Genetics and Molecular Biology |
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A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelinesbioinformaticsdatabasegene expressionsoybeanGenosojaThe Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression.Sociedade Brasileira de Genética2012-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000200002Genetics and Molecular Biology v.35 n.1 suppl.1 2012reponame:Genetics and Molecular Biologyinstname:Sociedade Brasileira de Genética (SBG)instacron:SBG10.1590/S1415-47572012000200002info:eu-repo/semantics/openAccessNascimento,Leandro Costa doCosta,Gustavo Gilson LacerdaBinneck,EliseuPereira,Gonçalo Amarante GuimarãesCarazzolle,Marcelo Falsarellaeng2012-06-01T00:00:00Zoai:scielo:S1415-47572012000200002Revistahttp://www.gmb.org.br/ONGhttps://old.scielo.br/oai/scielo-oai.php||editor@gmb.org.br1678-46851415-4757opendoar:2012-06-01T00:00Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)false |
dc.title.none.fl_str_mv |
A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines |
title |
A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines |
spellingShingle |
A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines Nascimento,Leandro Costa do bioinformatics database gene expression soybean Genosoja |
title_short |
A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines |
title_full |
A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines |
title_fullStr |
A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines |
title_full_unstemmed |
A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines |
title_sort |
A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines |
author |
Nascimento,Leandro Costa do |
author_facet |
Nascimento,Leandro Costa do Costa,Gustavo Gilson Lacerda Binneck,Eliseu Pereira,Gonçalo Amarante Guimarães Carazzolle,Marcelo Falsarella |
author_role |
author |
author2 |
Costa,Gustavo Gilson Lacerda Binneck,Eliseu Pereira,Gonçalo Amarante Guimarães Carazzolle,Marcelo Falsarella |
author2_role |
author author author author |
dc.contributor.author.fl_str_mv |
Nascimento,Leandro Costa do Costa,Gustavo Gilson Lacerda Binneck,Eliseu Pereira,Gonçalo Amarante Guimarães Carazzolle,Marcelo Falsarella |
dc.subject.por.fl_str_mv |
bioinformatics database gene expression soybean Genosoja |
topic |
bioinformatics database gene expression soybean Genosoja |
description |
The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression. |
publishDate |
2012 |
dc.date.none.fl_str_mv |
2012-01-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000200002 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000200002 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
10.1590/S1415-47572012000200002 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
Sociedade Brasileira de Genética |
publisher.none.fl_str_mv |
Sociedade Brasileira de Genética |
dc.source.none.fl_str_mv |
Genetics and Molecular Biology v.35 n.1 suppl.1 2012 reponame:Genetics and Molecular Biology instname:Sociedade Brasileira de Genética (SBG) instacron:SBG |
instname_str |
Sociedade Brasileira de Genética (SBG) |
instacron_str |
SBG |
institution |
SBG |
reponame_str |
Genetics and Molecular Biology |
collection |
Genetics and Molecular Biology |
repository.name.fl_str_mv |
Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG) |
repository.mail.fl_str_mv |
||editor@gmb.org.br |
_version_ |
1752122384544956416 |