Identification of Ten Long Noncoding RNAs as Biomarkers for Hepatocellular Carcinoma

Detalhes bibliográficos
Autor(a) principal: Lin,Chao
Data de Publicação: 2020
Outros Autores: Zhang,Dan, Yao,Xiaoxiao, Liu,Shui, Xiang,Yien, Zhang,Xuewen
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Brazilian Archives of Biology and Technology
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1516-89132020000100325
Resumo: Abstract Long-chain non-encoded RNAs (lncRNAs) are important in many life activities and can participate in the occurrence of hepatocellular carcinoma (HCC). Moreover, lncRNAs can be used as basis for developing new strategies to hinder liver cancer. To investigate the utility of lncRNAs in HCC as potential biomarkers for early detection and diagnosis, we mined genomic data from the Cancer Genome Atlas (TCGA), and analyzed the gene expressions from 374 tumor patients and 50 normal patients. The abnormal expressions of 387 differentially expressed lncRNAs (DElncRNAs) were identified from a total of 3099 lncRNAs. Moreover, 18 modules were divided based on WGCNA, and 2 of the 18 modules were positively correlated with stage and grade, and negatively correlated with survival time. Finally, 10 lncRNAs were found and their main functions are the enhancement of cellular metabolic capacity and cell proliferation. These 10 lncRNAs may serve as novel prognostic markers and therapeutic targets, and may help guide subsequent studies on HCC.
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spelling Identification of Ten Long Noncoding RNAs as Biomarkers for Hepatocellular Carcinomalong noncoding RNAshepatocellular carcinomabiomarkersAbstract Long-chain non-encoded RNAs (lncRNAs) are important in many life activities and can participate in the occurrence of hepatocellular carcinoma (HCC). Moreover, lncRNAs can be used as basis for developing new strategies to hinder liver cancer. To investigate the utility of lncRNAs in HCC as potential biomarkers for early detection and diagnosis, we mined genomic data from the Cancer Genome Atlas (TCGA), and analyzed the gene expressions from 374 tumor patients and 50 normal patients. The abnormal expressions of 387 differentially expressed lncRNAs (DElncRNAs) were identified from a total of 3099 lncRNAs. Moreover, 18 modules were divided based on WGCNA, and 2 of the 18 modules were positively correlated with stage and grade, and negatively correlated with survival time. Finally, 10 lncRNAs were found and their main functions are the enhancement of cellular metabolic capacity and cell proliferation. These 10 lncRNAs may serve as novel prognostic markers and therapeutic targets, and may help guide subsequent studies on HCC.Instituto de Tecnologia do Paraná - Tecpar2020-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1516-89132020000100325Brazilian Archives of Biology and Technology v.63 2020reponame:Brazilian Archives of Biology and Technologyinstname:Instituto de Tecnologia do Paraná (Tecpar)instacron:TECPAR10.1590/1678-4324-2020190511info:eu-repo/semantics/openAccessLin,ChaoZhang,DanYao,XiaoxiaoLiu,ShuiXiang,YienZhang,Xueweneng2020-10-14T00:00:00Zoai:scielo:S1516-89132020000100325Revistahttps://www.scielo.br/j/babt/https://old.scielo.br/oai/scielo-oai.phpbabt@tecpar.br||babt@tecpar.br1678-43241516-8913opendoar:2020-10-14T00:00Brazilian Archives of Biology and Technology - Instituto de Tecnologia do Paraná (Tecpar)false
dc.title.none.fl_str_mv Identification of Ten Long Noncoding RNAs as Biomarkers for Hepatocellular Carcinoma
title Identification of Ten Long Noncoding RNAs as Biomarkers for Hepatocellular Carcinoma
spellingShingle Identification of Ten Long Noncoding RNAs as Biomarkers for Hepatocellular Carcinoma
Lin,Chao
long noncoding RNAs
hepatocellular carcinoma
biomarkers
title_short Identification of Ten Long Noncoding RNAs as Biomarkers for Hepatocellular Carcinoma
title_full Identification of Ten Long Noncoding RNAs as Biomarkers for Hepatocellular Carcinoma
title_fullStr Identification of Ten Long Noncoding RNAs as Biomarkers for Hepatocellular Carcinoma
title_full_unstemmed Identification of Ten Long Noncoding RNAs as Biomarkers for Hepatocellular Carcinoma
title_sort Identification of Ten Long Noncoding RNAs as Biomarkers for Hepatocellular Carcinoma
author Lin,Chao
author_facet Lin,Chao
Zhang,Dan
Yao,Xiaoxiao
Liu,Shui
Xiang,Yien
Zhang,Xuewen
author_role author
author2 Zhang,Dan
Yao,Xiaoxiao
Liu,Shui
Xiang,Yien
Zhang,Xuewen
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Lin,Chao
Zhang,Dan
Yao,Xiaoxiao
Liu,Shui
Xiang,Yien
Zhang,Xuewen
dc.subject.por.fl_str_mv long noncoding RNAs
hepatocellular carcinoma
biomarkers
topic long noncoding RNAs
hepatocellular carcinoma
biomarkers
description Abstract Long-chain non-encoded RNAs (lncRNAs) are important in many life activities and can participate in the occurrence of hepatocellular carcinoma (HCC). Moreover, lncRNAs can be used as basis for developing new strategies to hinder liver cancer. To investigate the utility of lncRNAs in HCC as potential biomarkers for early detection and diagnosis, we mined genomic data from the Cancer Genome Atlas (TCGA), and analyzed the gene expressions from 374 tumor patients and 50 normal patients. The abnormal expressions of 387 differentially expressed lncRNAs (DElncRNAs) were identified from a total of 3099 lncRNAs. Moreover, 18 modules were divided based on WGCNA, and 2 of the 18 modules were positively correlated with stage and grade, and negatively correlated with survival time. Finally, 10 lncRNAs were found and their main functions are the enhancement of cellular metabolic capacity and cell proliferation. These 10 lncRNAs may serve as novel prognostic markers and therapeutic targets, and may help guide subsequent studies on HCC.
publishDate 2020
dc.date.none.fl_str_mv 2020-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1516-89132020000100325
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1516-89132020000100325
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/1678-4324-2020190511
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Instituto de Tecnologia do Paraná - Tecpar
publisher.none.fl_str_mv Instituto de Tecnologia do Paraná - Tecpar
dc.source.none.fl_str_mv Brazilian Archives of Biology and Technology v.63 2020
reponame:Brazilian Archives of Biology and Technology
instname:Instituto de Tecnologia do Paraná (Tecpar)
instacron:TECPAR
instname_str Instituto de Tecnologia do Paraná (Tecpar)
instacron_str TECPAR
institution TECPAR
reponame_str Brazilian Archives of Biology and Technology
collection Brazilian Archives of Biology and Technology
repository.name.fl_str_mv Brazilian Archives of Biology and Technology - Instituto de Tecnologia do Paraná (Tecpar)
repository.mail.fl_str_mv babt@tecpar.br||babt@tecpar.br
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