On fuzzy cluster validity indices for soft subspace clustering of high-dimensional datasets

Detalhes bibliográficos
Autor(a) principal: Eustáquio, Fernanda Silva
Data de Publicação: 2020
Tipo de documento: Dissertação
Idioma: eng
Título da fonte: Repositório Institucional da UFBA
Texto Completo: http://repositorio.ufba.br/ri/handle/ri/33507
Resumo: Most of the well-known and widely used conventional clustering algorithms, as k-Means and Fuzzy c-Means (FCM), were designed by assuming that, in most cases, the number of objects in a dataset will be greater than its number of dimensions (features). However, this assumption fails when a dataset consists of text documents or DNA microarrays, in which the number of dimensions is much bigger than the number of objects. Most studies have revealed that FCM and the fuzzy cluster validity indices (CVIs) perform poorly when they are used with high-dimensional data even when a similarity or dissimilarity measure suitable to this type of data is used. The problems faced by high dimensionality are known as the curse of dimensionality and some approaches such as feature transformation, feature selection, feature weighting, and subspace clustering were de ned to deal with thousands of dimensions. To be convinced that the number of dimensions should be maintained to learn as much as possible from an object and to know that just one subset of features might not be enough to all clusters, the soft subspace clustering technique was used in the proposed work. Besides FCM, three soft subspace algorithms, Simultaneous Clustering and Attribute Discrimination (SCAD), Maximum-entropy-regularized Weighted Fuzzy c-Means (EWFCM) and Enhanced Soft Subspace Clustering (ESSC) were performed to cluster three types of high-dimensional data (Gaussian mixture, text, microarray) and they were evaluated employing fuzzy CVIs instead of using external measures like Clustering Accuracy, Rand Index, Normalized Mutual Information, that use information from class labels, as usually done in most research studies. From the experimental results, in a general evaluation, all the clustering algorithms had similar performances highlighting that ESSC presented the best result and FCM was better than the remaining soft subspace algorithms. Besides the use of the soft subspace technique, in the search for the cause of the poor performance of the conventional techniques for high-dimensional data, it was investigated which distance measure or value of weighting fuzzy exponent (m) produced the best clustering result. Furthermore, the performance of nineteen fuzzy CVIs was evaluated by verifying if some tendencies and problems related to previous research studies are maintained when validating soft subspace clustering results. From the analysis made in this work, it was clear that the type of data was determinant to the performance of the clustering algorithms and fuzzy CVIs.
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spelling Eustáquio, Fernanda SilvaEustáquio, Fernanda SilvaRios, Tatiane NogueiraCamargo, Heloísa de ArrudaMarcacini, Ricardo Marcondes2021-05-27T21:10:35Z2021-05-272020-04-16http://repositorio.ufba.br/ri/handle/ri/33507Most of the well-known and widely used conventional clustering algorithms, as k-Means and Fuzzy c-Means (FCM), were designed by assuming that, in most cases, the number of objects in a dataset will be greater than its number of dimensions (features). However, this assumption fails when a dataset consists of text documents or DNA microarrays, in which the number of dimensions is much bigger than the number of objects. Most studies have revealed that FCM and the fuzzy cluster validity indices (CVIs) perform poorly when they are used with high-dimensional data even when a similarity or dissimilarity measure suitable to this type of data is used. The problems faced by high dimensionality are known as the curse of dimensionality and some approaches such as feature transformation, feature selection, feature weighting, and subspace clustering were de ned to deal with thousands of dimensions. To be convinced that the number of dimensions should be maintained to learn as much as possible from an object and to know that just one subset of features might not be enough to all clusters, the soft subspace clustering technique was used in the proposed work. Besides FCM, three soft subspace algorithms, Simultaneous Clustering and Attribute Discrimination (SCAD), Maximum-entropy-regularized Weighted Fuzzy c-Means (EWFCM) and Enhanced Soft Subspace Clustering (ESSC) were performed to cluster three types of high-dimensional data (Gaussian mixture, text, microarray) and they were evaluated employing fuzzy CVIs instead of using external measures like Clustering Accuracy, Rand Index, Normalized Mutual Information, that use information from class labels, as usually done in most research studies. From the experimental results, in a general evaluation, all the clustering algorithms had similar performances highlighting that ESSC presented the best result and FCM was better than the remaining soft subspace algorithms. Besides the use of the soft subspace technique, in the search for the cause of the poor performance of the conventional techniques for high-dimensional data, it was investigated which distance measure or value of weighting fuzzy exponent (m) produced the best clustering result. Furthermore, the performance of nineteen fuzzy CVIs was evaluated by verifying if some tendencies and problems related to previous research studies are maintained when validating soft subspace clustering results. From the analysis made in this work, it was clear that the type of data was determinant to the performance of the clustering algorithms and fuzzy CVIs.Submitted by Fernanda Eustáquio (fe-nanda7@hotmail.com) on 2021-05-22T14:47:23Z No. of bitstreams: 1 On_fuzzy_cluster_validity_indices_for_soft_subspace_clustering_of_high_dimensional_datasets.pdf: 3804438 bytes, checksum: 20a815fc083d5f23d5d22e66c06c5568 (MD5)Approved for entry into archive by Solange Rocha (soluny@gmail.com) on 2021-05-27T21:10:35Z (GMT) No. of bitstreams: 1 On_fuzzy_cluster_validity_indices_for_soft_subspace_clustering_of_high_dimensional_datasets.pdf: 3804438 bytes, checksum: 20a815fc083d5f23d5d22e66c06c5568 (MD5)Made available in DSpace on 2021-05-27T21:10:35Z (GMT). No. of bitstreams: 1 On_fuzzy_cluster_validity_indices_for_soft_subspace_clustering_of_high_dimensional_datasets.pdf: 3804438 bytes, checksum: 20a815fc083d5f23d5d22e66c06c5568 (MD5)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Ciências Exatas e da TerraCiência da ComputaçãoFuzzy cluster validity indicesSoft subspace clusteringFuzzy clusteringFuzzy c-Means modelHigh-dimensional dataAlgoritmo de agrupamentoOn fuzzy cluster validity indices for soft subspace clustering of high-dimensional datasetsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis10000-01-01Universidade Federal da BahiaInstituto de Matemática e EstatísticaDepartamento de Ciência da Computaçãoem Ciência da ComputaçãoUFBAbrasilinfo:eu-repo/semantics/openAccessengreponame:Repositório Institucional da UFBAinstname:Universidade Federal da Bahia (UFBA)instacron:UFBAORIGINALOn_fuzzy_cluster_validity_indices_for_soft_subspace_clustering_of_high_dimensional_datasets.pdfOn_fuzzy_cluster_validity_indices_for_soft_subspace_clustering_of_high_dimensional_datasets.pdfapplication/pdf3804438https://repositorio.ufba.br/bitstream/ri/33507/1/On_fuzzy_cluster_validity_indices_for_soft_subspace_clustering_of_high_dimensional_datasets.pdf20a815fc083d5f23d5d22e66c06c5568MD51LICENSElicense.txtlicense.txttext/plain1442https://repositorio.ufba.br/bitstream/ri/33507/2/license.txt817035eff4c4c7dda1d546e170ee2a1aMD52ri/335072023-07-18 13:22:18.786oai:repositorio.ufba.br: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Repositório InstitucionalPUBhttp://192.188.11.11:8080/oai/requestopendoar:19322023-07-18T16:22:18Repositório Institucional da UFBA - Universidade Federal da Bahia (UFBA)false
dc.title.pt_BR.fl_str_mv On fuzzy cluster validity indices for soft subspace clustering of high-dimensional datasets
title On fuzzy cluster validity indices for soft subspace clustering of high-dimensional datasets
spellingShingle On fuzzy cluster validity indices for soft subspace clustering of high-dimensional datasets
Eustáquio, Fernanda Silva
Ciências Exatas e da Terra
Ciência da Computação
Fuzzy cluster validity indices
Soft subspace clustering
Fuzzy clustering
Fuzzy c-Means model
High-dimensional data
Algoritmo de agrupamento
title_short On fuzzy cluster validity indices for soft subspace clustering of high-dimensional datasets
title_full On fuzzy cluster validity indices for soft subspace clustering of high-dimensional datasets
title_fullStr On fuzzy cluster validity indices for soft subspace clustering of high-dimensional datasets
title_full_unstemmed On fuzzy cluster validity indices for soft subspace clustering of high-dimensional datasets
title_sort On fuzzy cluster validity indices for soft subspace clustering of high-dimensional datasets
author Eustáquio, Fernanda Silva
author_facet Eustáquio, Fernanda Silva
author_role author
dc.contributor.author.fl_str_mv Eustáquio, Fernanda Silva
Eustáquio, Fernanda Silva
dc.contributor.advisor1.fl_str_mv Rios, Tatiane Nogueira
dc.contributor.referee1.fl_str_mv Camargo, Heloísa de Arruda
Marcacini, Ricardo Marcondes
contributor_str_mv Rios, Tatiane Nogueira
Camargo, Heloísa de Arruda
Marcacini, Ricardo Marcondes
dc.subject.cnpq.fl_str_mv Ciências Exatas e da Terra
Ciência da Computação
topic Ciências Exatas e da Terra
Ciência da Computação
Fuzzy cluster validity indices
Soft subspace clustering
Fuzzy clustering
Fuzzy c-Means model
High-dimensional data
Algoritmo de agrupamento
dc.subject.por.fl_str_mv Fuzzy cluster validity indices
Soft subspace clustering
Fuzzy clustering
Fuzzy c-Means model
High-dimensional data
Algoritmo de agrupamento
description Most of the well-known and widely used conventional clustering algorithms, as k-Means and Fuzzy c-Means (FCM), were designed by assuming that, in most cases, the number of objects in a dataset will be greater than its number of dimensions (features). However, this assumption fails when a dataset consists of text documents or DNA microarrays, in which the number of dimensions is much bigger than the number of objects. Most studies have revealed that FCM and the fuzzy cluster validity indices (CVIs) perform poorly when they are used with high-dimensional data even when a similarity or dissimilarity measure suitable to this type of data is used. The problems faced by high dimensionality are known as the curse of dimensionality and some approaches such as feature transformation, feature selection, feature weighting, and subspace clustering were de ned to deal with thousands of dimensions. To be convinced that the number of dimensions should be maintained to learn as much as possible from an object and to know that just one subset of features might not be enough to all clusters, the soft subspace clustering technique was used in the proposed work. Besides FCM, three soft subspace algorithms, Simultaneous Clustering and Attribute Discrimination (SCAD), Maximum-entropy-regularized Weighted Fuzzy c-Means (EWFCM) and Enhanced Soft Subspace Clustering (ESSC) were performed to cluster three types of high-dimensional data (Gaussian mixture, text, microarray) and they were evaluated employing fuzzy CVIs instead of using external measures like Clustering Accuracy, Rand Index, Normalized Mutual Information, that use information from class labels, as usually done in most research studies. From the experimental results, in a general evaluation, all the clustering algorithms had similar performances highlighting that ESSC presented the best result and FCM was better than the remaining soft subspace algorithms. Besides the use of the soft subspace technique, in the search for the cause of the poor performance of the conventional techniques for high-dimensional data, it was investigated which distance measure or value of weighting fuzzy exponent (m) produced the best clustering result. Furthermore, the performance of nineteen fuzzy CVIs was evaluated by verifying if some tendencies and problems related to previous research studies are maintained when validating soft subspace clustering results. From the analysis made in this work, it was clear that the type of data was determinant to the performance of the clustering algorithms and fuzzy CVIs.
publishDate 2020
dc.date.submitted.none.fl_str_mv 2020-04-16
dc.date.accessioned.fl_str_mv 2021-05-27T21:10:35Z
dc.date.issued.fl_str_mv 2021-05-27
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
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dc.identifier.uri.fl_str_mv http://repositorio.ufba.br/ri/handle/ri/33507
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dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.publisher.none.fl_str_mv Universidade Federal da Bahia
Instituto de Matemática e Estatística
Departamento de Ciência da Computação
dc.publisher.program.fl_str_mv em Ciência da Computação
dc.publisher.initials.fl_str_mv UFBA
dc.publisher.country.fl_str_mv brasil
publisher.none.fl_str_mv Universidade Federal da Bahia
Instituto de Matemática e Estatística
Departamento de Ciência da Computação
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFBA
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