Histogram score contributes for reliability of DNA content estimatives in Brachiaria spp

Detalhes bibliográficos
Autor(a) principal: Timbó,Ana Luiza de Oliveira
Data de Publicação: 2012
Outros Autores: Pereira,Roselaine Cristina, Santos,Vanderley Borges dos, Souza Sobrinho,Fausto, Davide,Lisete Chamma
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Ciência e Agrotecnologia (Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1413-70542012000600001
Resumo: Flow cytometry allows to estimate the DNA content of a large number of plants quickly. However, inadequate protocols can compromise the reliability of these estimates leading to variations in the values of DNA content the same species. The objective of this study was to propose an efficient protocol to estimate the DNA content of Brachiaria spp. genotypes with different ploidy levels using flow cytometry. We evaluated four genotypes (B. ruziziensis diploid and artificially tetraploidized; a tetraploid B. brizantha and a natural triploid hybrid), three buffer solutions (MgSO4, Galbraith and Tris-HCl) and three species as internal reference standards (Raphanus sativus, Solanum lycopersicum e Pisum sativum). The variables measured were: histogram score (1-5), coefficient of variation and estimation of DNA content. The best combination for the analysis of Brachiaria spp. DNA content was the use of MgSO4 buffer with R. sativus as a internal reference standard. Genome sizes expressed in picograms of DNA are presented for all genotypes and the importance of the histogram score on the results reliability of DNA content analyses were discussed.
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spelling Histogram score contributes for reliability of DNA content estimatives in Brachiaria sppBrachiaria ruziziensisBrachiaria brizanthacolchicinenuclear DNA contentFlow cytometry allows to estimate the DNA content of a large number of plants quickly. However, inadequate protocols can compromise the reliability of these estimates leading to variations in the values of DNA content the same species. The objective of this study was to propose an efficient protocol to estimate the DNA content of Brachiaria spp. genotypes with different ploidy levels using flow cytometry. We evaluated four genotypes (B. ruziziensis diploid and artificially tetraploidized; a tetraploid B. brizantha and a natural triploid hybrid), three buffer solutions (MgSO4, Galbraith and Tris-HCl) and three species as internal reference standards (Raphanus sativus, Solanum lycopersicum e Pisum sativum). The variables measured were: histogram score (1-5), coefficient of variation and estimation of DNA content. The best combination for the analysis of Brachiaria spp. DNA content was the use of MgSO4 buffer with R. sativus as a internal reference standard. Genome sizes expressed in picograms of DNA are presented for all genotypes and the importance of the histogram score on the results reliability of DNA content analyses were discussed.Editora da UFLA2012-12-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1413-70542012000600001Ciência e Agrotecnologia v.36 n.6 2012reponame:Ciência e Agrotecnologia (Online)instname:Universidade Federal de Lavras (UFLA)instacron:UFLA10.1590/S1413-70542012000600001info:eu-repo/semantics/openAccessTimbó,Ana Luiza de OliveiraPereira,Roselaine CristinaSantos,Vanderley Borges dosSouza Sobrinho,FaustoDavide,Lisete Chammaeng2012-12-17T00:00:00Zoai:scielo:S1413-70542012000600001Revistahttp://www.scielo.br/cagroPUBhttps://old.scielo.br/oai/scielo-oai.php||renpaiva@dbi.ufla.br|| editora@editora.ufla.br1981-18291413-7054opendoar:2022-11-22T16:31:14.828875Ciência e Agrotecnologia (Online) - Universidade Federal de Lavras (UFLA)true
dc.title.none.fl_str_mv Histogram score contributes for reliability of DNA content estimatives in Brachiaria spp
title Histogram score contributes for reliability of DNA content estimatives in Brachiaria spp
spellingShingle Histogram score contributes for reliability of DNA content estimatives in Brachiaria spp
Timbó,Ana Luiza de Oliveira
Brachiaria ruziziensis
Brachiaria brizantha
colchicine
nuclear DNA content
title_short Histogram score contributes for reliability of DNA content estimatives in Brachiaria spp
title_full Histogram score contributes for reliability of DNA content estimatives in Brachiaria spp
title_fullStr Histogram score contributes for reliability of DNA content estimatives in Brachiaria spp
title_full_unstemmed Histogram score contributes for reliability of DNA content estimatives in Brachiaria spp
title_sort Histogram score contributes for reliability of DNA content estimatives in Brachiaria spp
author Timbó,Ana Luiza de Oliveira
author_facet Timbó,Ana Luiza de Oliveira
Pereira,Roselaine Cristina
Santos,Vanderley Borges dos
Souza Sobrinho,Fausto
Davide,Lisete Chamma
author_role author
author2 Pereira,Roselaine Cristina
Santos,Vanderley Borges dos
Souza Sobrinho,Fausto
Davide,Lisete Chamma
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Timbó,Ana Luiza de Oliveira
Pereira,Roselaine Cristina
Santos,Vanderley Borges dos
Souza Sobrinho,Fausto
Davide,Lisete Chamma
dc.subject.por.fl_str_mv Brachiaria ruziziensis
Brachiaria brizantha
colchicine
nuclear DNA content
topic Brachiaria ruziziensis
Brachiaria brizantha
colchicine
nuclear DNA content
description Flow cytometry allows to estimate the DNA content of a large number of plants quickly. However, inadequate protocols can compromise the reliability of these estimates leading to variations in the values of DNA content the same species. The objective of this study was to propose an efficient protocol to estimate the DNA content of Brachiaria spp. genotypes with different ploidy levels using flow cytometry. We evaluated four genotypes (B. ruziziensis diploid and artificially tetraploidized; a tetraploid B. brizantha and a natural triploid hybrid), three buffer solutions (MgSO4, Galbraith and Tris-HCl) and three species as internal reference standards (Raphanus sativus, Solanum lycopersicum e Pisum sativum). The variables measured were: histogram score (1-5), coefficient of variation and estimation of DNA content. The best combination for the analysis of Brachiaria spp. DNA content was the use of MgSO4 buffer with R. sativus as a internal reference standard. Genome sizes expressed in picograms of DNA are presented for all genotypes and the importance of the histogram score on the results reliability of DNA content analyses were discussed.
publishDate 2012
dc.date.none.fl_str_mv 2012-12-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1413-70542012000600001
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1413-70542012000600001
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/S1413-70542012000600001
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Editora da UFLA
publisher.none.fl_str_mv Editora da UFLA
dc.source.none.fl_str_mv Ciência e Agrotecnologia v.36 n.6 2012
reponame:Ciência e Agrotecnologia (Online)
instname:Universidade Federal de Lavras (UFLA)
instacron:UFLA
instname_str Universidade Federal de Lavras (UFLA)
instacron_str UFLA
institution UFLA
reponame_str Ciência e Agrotecnologia (Online)
collection Ciência e Agrotecnologia (Online)
repository.name.fl_str_mv Ciência e Agrotecnologia (Online) - Universidade Federal de Lavras (UFLA)
repository.mail.fl_str_mv ||renpaiva@dbi.ufla.br|| editora@editora.ufla.br
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