An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in attention-deficit/hyperactivity disorder
Autor(a) principal: | |
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Data de Publicação: | 2016 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFRGS |
Texto Completo: | http://hdl.handle.net/10183/149756 |
Resumo: | Many studies have attempted to investigate the genetic susceptibility of Attention-Deficit/ Hyperactivity Disorder (ADHD), but without much success. The present study aimed to analyze both single-nucleotide and copy-number variants contributing to the genetic architecture of ADHD. We generated exome data from 30 Brazilian trios with sporadic ADHD. We also analyzed a Brazilian sample of 503 children/adolescent controls from a High Risk Cohort Study for the Development of Childhood Psychiatric Disorders, and also previously published results of five CNV studies and one GWAS metaanalysis of ADHD involving children/adolescents. The results from the Brazilian trios showed that cases with de novo SNVs tend not to have de novo CNVs and vice-versa. Although the sample size is small, we could also see that various comorbidities are more frequent in cases with only inherited variants. Moreover, using only genes expressed in brain, we constructed two “in silico” protein-protein interaction networks, one with genes from any analysis, and other with genes with hits in two analyses. Topological and functional analyses of genes in this network uncovered genes related to synapse, cell adhesion, glutamatergic and serotoninergic pathways, both confirming findings of previous studies and capturing new genes and genetic variants in these pathways. |
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Lima, Leandro de AraújoFeio-dos-Santos, Ana CecíliaBelangero, Síntia Iole NogueiraGadelha, AryBressan, Rodrigo AffonsecaSalum Junior, Giovanni AbrahãoPan, Pedro MarioMoriyama, Taís SilveiraGraeff-Martins, Ana SoledadeTamanaha, MárciaAlvarenga, Pedro Gomes deKrieger, Fernanda ValleBilyk, Bacy FleitlichJackowski, Andrea ParolinBrietzke, Elisa MacedoSato, João RicardoPolanczyk, Guilherme VanoniMari, Jair de JesusManfro, Gisele GusRosário, Maria Conceição doMiguel, Eurípedes ConstantinoPuga, Renato DavidTahira, Ana CarolinaSouza, Viviane NeriChile, ThaisGouveia, Gisele RodriguesSimões, Sérgio NeryChang, XiaoPellegrino, RenataTian, LifengGlessner, Joseph T.Hashimoto, Ronaldo FumioRohde, Luis Augusto PaimSleiman, Patrick M.A.Hakonarson, HakonBrentani, Helena Paula2016-11-19T02:16:54Z20162045-2322http://hdl.handle.net/10183/149756000997215Many studies have attempted to investigate the genetic susceptibility of Attention-Deficit/ Hyperactivity Disorder (ADHD), but without much success. The present study aimed to analyze both single-nucleotide and copy-number variants contributing to the genetic architecture of ADHD. We generated exome data from 30 Brazilian trios with sporadic ADHD. We also analyzed a Brazilian sample of 503 children/adolescent controls from a High Risk Cohort Study for the Development of Childhood Psychiatric Disorders, and also previously published results of five CNV studies and one GWAS metaanalysis of ADHD involving children/adolescents. The results from the Brazilian trios showed that cases with de novo SNVs tend not to have de novo CNVs and vice-versa. Although the sample size is small, we could also see that various comorbidities are more frequent in cases with only inherited variants. Moreover, using only genes expressed in brain, we constructed two “in silico” protein-protein interaction networks, one with genes from any analysis, and other with genes with hits in two analyses. Topological and functional analyses of genes in this network uncovered genes related to synapse, cell adhesion, glutamatergic and serotoninergic pathways, both confirming findings of previous studies and capturing new genes and genetic variants in these pathways.application/pdfengScientific reports. London. Vol. 6 (Mar. 2016), 22851, [13] p.Transtorno do déficit de atenção com hiperatividadePolimorfismo de nucleotídeo únicoAn integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in attention-deficit/hyperactivity disorderEstrangeiroinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSTEXT000997215.pdf.txt000997215.pdf.txtExtracted Texttext/plain64765http://www.lume.ufrgs.br/bitstream/10183/149756/3/000997215.pdf.txt86f5019d1886ea80c74a0db6ace6f145MD53000997215-02.pdf.txt000997215-02.pdf.txtExtracted Texttext/plain2906http://www.lume.ufrgs.br/bitstream/10183/149756/4/000997215-02.pdf.txt262707e3bc9d7424b74cc954ad0546c4MD54ORIGINAL000997215.pdf000997215.pdfTexto completo (inglês)application/pdf1615403http://www.lume.ufrgs.br/bitstream/10183/149756/1/000997215.pdf44b302413eef864187e348ee0521b04eMD51000997215-02.pdfErrataapplication/pdf128409http://www.lume.ufrgs.br/bitstream/10183/149756/2/000997215-02.pdfec914d80d88a9f23ee721fe037745e78MD5210183/1497562023-05-13 03:28:49.697741oai:www.lume.ufrgs.br:10183/149756Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2023-05-13T06:28:49Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false |
dc.title.pt_BR.fl_str_mv |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in attention-deficit/hyperactivity disorder |
title |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in attention-deficit/hyperactivity disorder |
spellingShingle |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in attention-deficit/hyperactivity disorder Lima, Leandro de Araújo Transtorno do déficit de atenção com hiperatividade Polimorfismo de nucleotídeo único |
title_short |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in attention-deficit/hyperactivity disorder |
title_full |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in attention-deficit/hyperactivity disorder |
title_fullStr |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in attention-deficit/hyperactivity disorder |
title_full_unstemmed |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in attention-deficit/hyperactivity disorder |
title_sort |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in attention-deficit/hyperactivity disorder |
author |
Lima, Leandro de Araújo |
author_facet |
Lima, Leandro de Araújo Feio-dos-Santos, Ana Cecília Belangero, Síntia Iole Nogueira Gadelha, Ary Bressan, Rodrigo Affonseca Salum Junior, Giovanni Abrahão Pan, Pedro Mario Moriyama, Taís Silveira Graeff-Martins, Ana Soledade Tamanaha, Márcia Alvarenga, Pedro Gomes de Krieger, Fernanda Valle Bilyk, Bacy Fleitlich Jackowski, Andrea Parolin Brietzke, Elisa Macedo Sato, João Ricardo Polanczyk, Guilherme Vanoni Mari, Jair de Jesus Manfro, Gisele Gus Rosário, Maria Conceição do Miguel, Eurípedes Constantino Puga, Renato David Tahira, Ana Carolina Souza, Viviane Neri Chile, Thais Gouveia, Gisele Rodrigues Simões, Sérgio Nery Chang, Xiao Pellegrino, Renata Tian, Lifeng Glessner, Joseph T. Hashimoto, Ronaldo Fumio Rohde, Luis Augusto Paim Sleiman, Patrick M.A. Hakonarson, Hakon Brentani, Helena Paula |
author_role |
author |
author2 |
Feio-dos-Santos, Ana Cecília Belangero, Síntia Iole Nogueira Gadelha, Ary Bressan, Rodrigo Affonseca Salum Junior, Giovanni Abrahão Pan, Pedro Mario Moriyama, Taís Silveira Graeff-Martins, Ana Soledade Tamanaha, Márcia Alvarenga, Pedro Gomes de Krieger, Fernanda Valle Bilyk, Bacy Fleitlich Jackowski, Andrea Parolin Brietzke, Elisa Macedo Sato, João Ricardo Polanczyk, Guilherme Vanoni Mari, Jair de Jesus Manfro, Gisele Gus Rosário, Maria Conceição do Miguel, Eurípedes Constantino Puga, Renato David Tahira, Ana Carolina Souza, Viviane Neri Chile, Thais Gouveia, Gisele Rodrigues Simões, Sérgio Nery Chang, Xiao Pellegrino, Renata Tian, Lifeng Glessner, Joseph T. Hashimoto, Ronaldo Fumio Rohde, Luis Augusto Paim Sleiman, Patrick M.A. Hakonarson, Hakon Brentani, Helena Paula |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Lima, Leandro de Araújo Feio-dos-Santos, Ana Cecília Belangero, Síntia Iole Nogueira Gadelha, Ary Bressan, Rodrigo Affonseca Salum Junior, Giovanni Abrahão Pan, Pedro Mario Moriyama, Taís Silveira Graeff-Martins, Ana Soledade Tamanaha, Márcia Alvarenga, Pedro Gomes de Krieger, Fernanda Valle Bilyk, Bacy Fleitlich Jackowski, Andrea Parolin Brietzke, Elisa Macedo Sato, João Ricardo Polanczyk, Guilherme Vanoni Mari, Jair de Jesus Manfro, Gisele Gus Rosário, Maria Conceição do Miguel, Eurípedes Constantino Puga, Renato David Tahira, Ana Carolina Souza, Viviane Neri Chile, Thais Gouveia, Gisele Rodrigues Simões, Sérgio Nery Chang, Xiao Pellegrino, Renata Tian, Lifeng Glessner, Joseph T. Hashimoto, Ronaldo Fumio Rohde, Luis Augusto Paim Sleiman, Patrick M.A. Hakonarson, Hakon Brentani, Helena Paula |
dc.subject.por.fl_str_mv |
Transtorno do déficit de atenção com hiperatividade Polimorfismo de nucleotídeo único |
topic |
Transtorno do déficit de atenção com hiperatividade Polimorfismo de nucleotídeo único |
description |
Many studies have attempted to investigate the genetic susceptibility of Attention-Deficit/ Hyperactivity Disorder (ADHD), but without much success. The present study aimed to analyze both single-nucleotide and copy-number variants contributing to the genetic architecture of ADHD. We generated exome data from 30 Brazilian trios with sporadic ADHD. We also analyzed a Brazilian sample of 503 children/adolescent controls from a High Risk Cohort Study for the Development of Childhood Psychiatric Disorders, and also previously published results of five CNV studies and one GWAS metaanalysis of ADHD involving children/adolescents. The results from the Brazilian trios showed that cases with de novo SNVs tend not to have de novo CNVs and vice-versa. Although the sample size is small, we could also see that various comorbidities are more frequent in cases with only inherited variants. Moreover, using only genes expressed in brain, we constructed two “in silico” protein-protein interaction networks, one with genes from any analysis, and other with genes with hits in two analyses. Topological and functional analyses of genes in this network uncovered genes related to synapse, cell adhesion, glutamatergic and serotoninergic pathways, both confirming findings of previous studies and capturing new genes and genetic variants in these pathways. |
publishDate |
2016 |
dc.date.accessioned.fl_str_mv |
2016-11-19T02:16:54Z |
dc.date.issued.fl_str_mv |
2016 |
dc.type.driver.fl_str_mv |
Estrangeiro info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
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publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10183/149756 |
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2045-2322 |
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000997215 |
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2045-2322 000997215 |
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http://hdl.handle.net/10183/149756 |
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eng |
language |
eng |
dc.relation.ispartof.pt_BR.fl_str_mv |
Scientific reports. London. Vol. 6 (Mar. 2016), 22851, [13] p. |
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info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
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