An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder

Detalhes bibliográficos
Autor(a) principal: Lima, Leandro de Araujo
Data de Publicação: 2016
Outros Autores: Feio-dos-Santos, Ana Cecilia, Belangero, Sintia Iole [UNIFESP], Gadelha, Ary [UNIFESP], Bressan, Rodrigo Affonseca [UNIFESP], Salum, Giovanni Abrahao, Pan, Pedro Mario [UNIFESP], Moriyama, Tais Silveira [UNIFESP], Graeff-Martins, Ana Soledade, Tamanaha, Ana Carina [UNIFESP], Alvarenga, Pedro, Krieger, Fernanda Valle, Fleitlich-Bilyk, Bacy, Jackowski, Andrea Parolin [UNIFESP], Brietzke, Elisa [UNIFESP], Sato, Joao Ricardo, Polanczyk, Guilherme Vanoni, Mari, Jair de Jesus [UNIFESP], Manfro, Gisele Gus [UNIFESP], do Rosario, Maria Conceicao [UNIFESP], Miguel, Euripedes Constantino, Puga, Renato David, Tahira, Ana Carolina, Souza, Viviane Neri, Chile, Thais, Gouveia, Gisele Rodrigues, Simoes, Sergio Nery, Chang, Xiao, Pellegrino, Renata, Tian, Lifeng, Glessner, Joseph T., Hashimoto, Ronaldo Fumio, Rohde, Luis Augusto [UNIFESP], Sleiman, Patrick M. A., Hakonarson, Hakon, Brentani, Helena
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNIFESP
dARK ID: ark:/48912/001300001906n
DOI: 10.1038/srep22851
Texto Completo: http://dx.doi.org/10.1038/srep22851
https://repositorio.unifesp.br/handle/11600/57797
Resumo: Many studies have attempted to investigate the genetic susceptibility of Attention-Deficit/Hyperactivity Disorder (ADHD), but without much success. The present study aimed to analyze both single-nucleotide and copy-number variants contributing to the genetic architecture of ADHD. We generated exome data from 30 Brazilian trios with sporadic ADHD. We also analyzed a Brazilian sample of 503 children/adolescent controls from a High Risk Cohort Study for the Development of Childhood Psychiatric Disorders, and also previously published results of five CNV studies and one GWAS meta-analysis of ADHD involving children/adolescents. The results from the Brazilian trios showed that cases with de novo SNVs tend not to have de novo CNVs and vice-versa. Although the sample size is small, we could also see that various comorbidities are more frequent in cases with only inherited variants. Moreover, using only genes expressed in brain, we constructed two "in silico" protein-protein interaction networks, one with genes from any analysis, and other with genes with hits in two analyses. Topological and functional analyses of genes in this network uncovered genes related to synapse, cell adhesion, glutamatergic and serotoninergic pathways, both confirming findings of previous studies and capturing new genes and genetic variants in these pathways.
id UFSP_b0c8fcf2fd37345911a0046a1de453d2
oai_identifier_str oai:repositorio.unifesp.br/:11600/57797
network_acronym_str UFSP
network_name_str Repositório Institucional da UNIFESP
repository_id_str 3465
spelling An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity DisorderMany studies have attempted to investigate the genetic susceptibility of Attention-Deficit/Hyperactivity Disorder (ADHD), but without much success. The present study aimed to analyze both single-nucleotide and copy-number variants contributing to the genetic architecture of ADHD. We generated exome data from 30 Brazilian trios with sporadic ADHD. We also analyzed a Brazilian sample of 503 children/adolescent controls from a High Risk Cohort Study for the Development of Childhood Psychiatric Disorders, and also previously published results of five CNV studies and one GWAS meta-analysis of ADHD involving children/adolescents. The results from the Brazilian trios showed that cases with de novo SNVs tend not to have de novo CNVs and vice-versa. Although the sample size is small, we could also see that various comorbidities are more frequent in cases with only inherited variants. Moreover, using only genes expressed in brain, we constructed two "in silico" protein-protein interaction networks, one with genes from any analysis, and other with genes with hits in two analyses. Topological and functional analyses of genes in this network uncovered genes related to synapse, cell adhesion, glutamatergic and serotoninergic pathways, both confirming findings of previous studies and capturing new genes and genetic variants in these pathways.Univ Sao Paulo, Interinst Grad Program Bioinformat, Sao Paulo, SP, BrazilChildrens Hosp Philadelphia, Ctr Appl Genom, Philadelphia, PA 19104 USAUniv Sao Paulo, Sch Med, Dept & Inst Psychiat, Sao Paulo, SP, BrazilKrieger, Natl Inst Dev Psychiat Children & Adolescents INC, Sao Paulo, SP, BrazilUniv Fed Rio Grande do Sul, Dept Psychiat, Hosp Clin Porto Alegre, Porto Alegre, RS, BrazilUniv Fed Sao Paulo, Dept Psychiat, Sao Paulo, SP, BrazilUniv Fed ABC, Ctr Math Computat & Cognit, Santo Andre, BrazilHosp Israelita Albert Einstein, Clin Res, Sao Paulo, SP, BrazilFed Inst Espirito Santo, Serra, ES, BrazilUniv Sao Paulo, Math & Stat Inst, Sao Paulo, SP, BrazilUniv Penn, Dept Pediat, Perelman Sch Med, Philadelphia, PA 19104 USAUniv Fed Sao Paulo, Dept Psychiat, Sao Paulo, SP, BrazilWeb of ScienceNational Institute of Developmental Psychiatry for Children and AdolescentsConselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPqNational Council for Scientific and Technological Development)Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESPResearch Support Foundation of the State of Sao PauloConselho Nacional de Desenvolvimento Científico e Tecnológico (CAPES)National Council for Scientific and Technological Development: 573974/2008-0FAPESP: 2008/57896-8CAPES: 10682/13-9Nature Publishing Group2020-08-21T16:59:53Z2020-08-21T16:59:53Z2016info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion-application/pdfhttp://dx.doi.org/10.1038/srep22851Scientific Reports. London, v. 6, p. -, 2016.10.1038/srep22851WOS000371466600001.pdf2045-2322https://repositorio.unifesp.br/handle/11600/57797WOS:000371466600001ark:/48912/001300001906nengScientific ReportsLondoninfo:eu-repo/semantics/openAccessLima, Leandro de AraujoFeio-dos-Santos, Ana CeciliaBelangero, Sintia Iole [UNIFESP]Gadelha, Ary [UNIFESP]Bressan, Rodrigo Affonseca [UNIFESP]Salum, Giovanni AbrahaoPan, Pedro Mario [UNIFESP]Moriyama, Tais Silveira [UNIFESP]Graeff-Martins, Ana SoledadeTamanaha, Ana Carina [UNIFESP]Alvarenga, PedroKrieger, Fernanda ValleFleitlich-Bilyk, BacyJackowski, Andrea Parolin [UNIFESP]Brietzke, Elisa [UNIFESP]Sato, Joao RicardoPolanczyk, Guilherme VanoniMari, Jair de Jesus [UNIFESP]Manfro, Gisele Gus [UNIFESP]do Rosario, Maria Conceicao [UNIFESP]Miguel, Euripedes ConstantinoPuga, Renato DavidTahira, Ana CarolinaSouza, Viviane NeriChile, ThaisGouveia, Gisele RodriguesSimoes, Sergio NeryChang, XiaoPellegrino, RenataTian, LifengGlessner, Joseph T.Hashimoto, Ronaldo FumioRohde, Luis Augusto [UNIFESP]Sleiman, Patrick M. A.Hakonarson, HakonBrentani, Helenareponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-08-01T11:21:20Zoai:repositorio.unifesp.br/:11600/57797Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-12-11T21:04:45.029838Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false
dc.title.none.fl_str_mv An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder
title An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder
spellingShingle An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder
Lima, Leandro de Araujo
Lima, Leandro de Araujo
title_short An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder
title_full An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder
title_fullStr An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder
title_full_unstemmed An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder
title_sort An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder
author Lima, Leandro de Araujo
author_facet Lima, Leandro de Araujo
Lima, Leandro de Araujo
Feio-dos-Santos, Ana Cecilia
Belangero, Sintia Iole [UNIFESP]
Gadelha, Ary [UNIFESP]
Bressan, Rodrigo Affonseca [UNIFESP]
Salum, Giovanni Abrahao
Pan, Pedro Mario [UNIFESP]
Moriyama, Tais Silveira [UNIFESP]
Graeff-Martins, Ana Soledade
Tamanaha, Ana Carina [UNIFESP]
Alvarenga, Pedro
Krieger, Fernanda Valle
Fleitlich-Bilyk, Bacy
Jackowski, Andrea Parolin [UNIFESP]
Brietzke, Elisa [UNIFESP]
Sato, Joao Ricardo
Polanczyk, Guilherme Vanoni
Mari, Jair de Jesus [UNIFESP]
Manfro, Gisele Gus [UNIFESP]
do Rosario, Maria Conceicao [UNIFESP]
Miguel, Euripedes Constantino
Puga, Renato David
Tahira, Ana Carolina
Souza, Viviane Neri
Chile, Thais
Gouveia, Gisele Rodrigues
Simoes, Sergio Nery
Chang, Xiao
Pellegrino, Renata
Tian, Lifeng
Glessner, Joseph T.
Hashimoto, Ronaldo Fumio
Rohde, Luis Augusto [UNIFESP]
Sleiman, Patrick M. A.
Hakonarson, Hakon
Brentani, Helena
Feio-dos-Santos, Ana Cecilia
Belangero, Sintia Iole [UNIFESP]
Gadelha, Ary [UNIFESP]
Bressan, Rodrigo Affonseca [UNIFESP]
Salum, Giovanni Abrahao
Pan, Pedro Mario [UNIFESP]
Moriyama, Tais Silveira [UNIFESP]
Graeff-Martins, Ana Soledade
Tamanaha, Ana Carina [UNIFESP]
Alvarenga, Pedro
Krieger, Fernanda Valle
Fleitlich-Bilyk, Bacy
Jackowski, Andrea Parolin [UNIFESP]
Brietzke, Elisa [UNIFESP]
Sato, Joao Ricardo
Polanczyk, Guilherme Vanoni
Mari, Jair de Jesus [UNIFESP]
Manfro, Gisele Gus [UNIFESP]
do Rosario, Maria Conceicao [UNIFESP]
Miguel, Euripedes Constantino
Puga, Renato David
Tahira, Ana Carolina
Souza, Viviane Neri
Chile, Thais
Gouveia, Gisele Rodrigues
Simoes, Sergio Nery
Chang, Xiao
Pellegrino, Renata
Tian, Lifeng
Glessner, Joseph T.
Hashimoto, Ronaldo Fumio
Rohde, Luis Augusto [UNIFESP]
Sleiman, Patrick M. A.
Hakonarson, Hakon
Brentani, Helena
author_role author
author2 Feio-dos-Santos, Ana Cecilia
Belangero, Sintia Iole [UNIFESP]
Gadelha, Ary [UNIFESP]
Bressan, Rodrigo Affonseca [UNIFESP]
Salum, Giovanni Abrahao
Pan, Pedro Mario [UNIFESP]
Moriyama, Tais Silveira [UNIFESP]
Graeff-Martins, Ana Soledade
Tamanaha, Ana Carina [UNIFESP]
Alvarenga, Pedro
Krieger, Fernanda Valle
Fleitlich-Bilyk, Bacy
Jackowski, Andrea Parolin [UNIFESP]
Brietzke, Elisa [UNIFESP]
Sato, Joao Ricardo
Polanczyk, Guilherme Vanoni
Mari, Jair de Jesus [UNIFESP]
Manfro, Gisele Gus [UNIFESP]
do Rosario, Maria Conceicao [UNIFESP]
Miguel, Euripedes Constantino
Puga, Renato David
Tahira, Ana Carolina
Souza, Viviane Neri
Chile, Thais
Gouveia, Gisele Rodrigues
Simoes, Sergio Nery
Chang, Xiao
Pellegrino, Renata
Tian, Lifeng
Glessner, Joseph T.
Hashimoto, Ronaldo Fumio
Rohde, Luis Augusto [UNIFESP]
Sleiman, Patrick M. A.
Hakonarson, Hakon
Brentani, Helena
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Lima, Leandro de Araujo
Feio-dos-Santos, Ana Cecilia
Belangero, Sintia Iole [UNIFESP]
Gadelha, Ary [UNIFESP]
Bressan, Rodrigo Affonseca [UNIFESP]
Salum, Giovanni Abrahao
Pan, Pedro Mario [UNIFESP]
Moriyama, Tais Silveira [UNIFESP]
Graeff-Martins, Ana Soledade
Tamanaha, Ana Carina [UNIFESP]
Alvarenga, Pedro
Krieger, Fernanda Valle
Fleitlich-Bilyk, Bacy
Jackowski, Andrea Parolin [UNIFESP]
Brietzke, Elisa [UNIFESP]
Sato, Joao Ricardo
Polanczyk, Guilherme Vanoni
Mari, Jair de Jesus [UNIFESP]
Manfro, Gisele Gus [UNIFESP]
do Rosario, Maria Conceicao [UNIFESP]
Miguel, Euripedes Constantino
Puga, Renato David
Tahira, Ana Carolina
Souza, Viviane Neri
Chile, Thais
Gouveia, Gisele Rodrigues
Simoes, Sergio Nery
Chang, Xiao
Pellegrino, Renata
Tian, Lifeng
Glessner, Joseph T.
Hashimoto, Ronaldo Fumio
Rohde, Luis Augusto [UNIFESP]
Sleiman, Patrick M. A.
Hakonarson, Hakon
Brentani, Helena
description Many studies have attempted to investigate the genetic susceptibility of Attention-Deficit/Hyperactivity Disorder (ADHD), but without much success. The present study aimed to analyze both single-nucleotide and copy-number variants contributing to the genetic architecture of ADHD. We generated exome data from 30 Brazilian trios with sporadic ADHD. We also analyzed a Brazilian sample of 503 children/adolescent controls from a High Risk Cohort Study for the Development of Childhood Psychiatric Disorders, and also previously published results of five CNV studies and one GWAS meta-analysis of ADHD involving children/adolescents. The results from the Brazilian trios showed that cases with de novo SNVs tend not to have de novo CNVs and vice-versa. Although the sample size is small, we could also see that various comorbidities are more frequent in cases with only inherited variants. Moreover, using only genes expressed in brain, we constructed two "in silico" protein-protein interaction networks, one with genes from any analysis, and other with genes with hits in two analyses. Topological and functional analyses of genes in this network uncovered genes related to synapse, cell adhesion, glutamatergic and serotoninergic pathways, both confirming findings of previous studies and capturing new genes and genetic variants in these pathways.
publishDate 2016
dc.date.none.fl_str_mv 2016
2020-08-21T16:59:53Z
2020-08-21T16:59:53Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1038/srep22851
Scientific Reports. London, v. 6, p. -, 2016.
10.1038/srep22851
WOS000371466600001.pdf
2045-2322
https://repositorio.unifesp.br/handle/11600/57797
WOS:000371466600001
dc.identifier.dark.fl_str_mv ark:/48912/001300001906n
url http://dx.doi.org/10.1038/srep22851
https://repositorio.unifesp.br/handle/11600/57797
identifier_str_mv Scientific Reports. London, v. 6, p. -, 2016.
10.1038/srep22851
WOS000371466600001.pdf
2045-2322
WOS:000371466600001
ark:/48912/001300001906n
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Scientific Reports
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv -
application/pdf
dc.coverage.none.fl_str_mv London
dc.publisher.none.fl_str_mv Nature Publishing Group
publisher.none.fl_str_mv Nature Publishing Group
dc.source.none.fl_str_mv reponame:Repositório Institucional da UNIFESP
instname:Universidade Federal de São Paulo (UNIFESP)
instacron:UNIFESP
instname_str Universidade Federal de São Paulo (UNIFESP)
instacron_str UNIFESP
institution UNIFESP
reponame_str Repositório Institucional da UNIFESP
collection Repositório Institucional da UNIFESP
repository.name.fl_str_mv Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)
repository.mail.fl_str_mv biblioteca.csp@unifesp.br
_version_ 1822219244219138048
dc.identifier.doi.none.fl_str_mv 10.1038/srep22851