An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder
Autor(a) principal: | |
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Data de Publicação: | 2016 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNIFESP |
dARK ID: | ark:/48912/001300001906n |
DOI: | 10.1038/srep22851 |
Texto Completo: | http://dx.doi.org/10.1038/srep22851 https://repositorio.unifesp.br/handle/11600/57797 |
Resumo: | Many studies have attempted to investigate the genetic susceptibility of Attention-Deficit/Hyperactivity Disorder (ADHD), but without much success. The present study aimed to analyze both single-nucleotide and copy-number variants contributing to the genetic architecture of ADHD. We generated exome data from 30 Brazilian trios with sporadic ADHD. We also analyzed a Brazilian sample of 503 children/adolescent controls from a High Risk Cohort Study for the Development of Childhood Psychiatric Disorders, and also previously published results of five CNV studies and one GWAS meta-analysis of ADHD involving children/adolescents. The results from the Brazilian trios showed that cases with de novo SNVs tend not to have de novo CNVs and vice-versa. Although the sample size is small, we could also see that various comorbidities are more frequent in cases with only inherited variants. Moreover, using only genes expressed in brain, we constructed two "in silico" protein-protein interaction networks, one with genes from any analysis, and other with genes with hits in two analyses. Topological and functional analyses of genes in this network uncovered genes related to synapse, cell adhesion, glutamatergic and serotoninergic pathways, both confirming findings of previous studies and capturing new genes and genetic variants in these pathways. |
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An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity DisorderMany studies have attempted to investigate the genetic susceptibility of Attention-Deficit/Hyperactivity Disorder (ADHD), but without much success. The present study aimed to analyze both single-nucleotide and copy-number variants contributing to the genetic architecture of ADHD. We generated exome data from 30 Brazilian trios with sporadic ADHD. We also analyzed a Brazilian sample of 503 children/adolescent controls from a High Risk Cohort Study for the Development of Childhood Psychiatric Disorders, and also previously published results of five CNV studies and one GWAS meta-analysis of ADHD involving children/adolescents. The results from the Brazilian trios showed that cases with de novo SNVs tend not to have de novo CNVs and vice-versa. Although the sample size is small, we could also see that various comorbidities are more frequent in cases with only inherited variants. Moreover, using only genes expressed in brain, we constructed two "in silico" protein-protein interaction networks, one with genes from any analysis, and other with genes with hits in two analyses. Topological and functional analyses of genes in this network uncovered genes related to synapse, cell adhesion, glutamatergic and serotoninergic pathways, both confirming findings of previous studies and capturing new genes and genetic variants in these pathways.Univ Sao Paulo, Interinst Grad Program Bioinformat, Sao Paulo, SP, BrazilChildrens Hosp Philadelphia, Ctr Appl Genom, Philadelphia, PA 19104 USAUniv Sao Paulo, Sch Med, Dept & Inst Psychiat, Sao Paulo, SP, BrazilKrieger, Natl Inst Dev Psychiat Children & Adolescents INC, Sao Paulo, SP, BrazilUniv Fed Rio Grande do Sul, Dept Psychiat, Hosp Clin Porto Alegre, Porto Alegre, RS, BrazilUniv Fed Sao Paulo, Dept Psychiat, Sao Paulo, SP, BrazilUniv Fed ABC, Ctr Math Computat & Cognit, Santo Andre, BrazilHosp Israelita Albert Einstein, Clin Res, Sao Paulo, SP, BrazilFed Inst Espirito Santo, Serra, ES, BrazilUniv Sao Paulo, Math & Stat Inst, Sao Paulo, SP, BrazilUniv Penn, Dept Pediat, Perelman Sch Med, Philadelphia, PA 19104 USAUniv Fed Sao Paulo, Dept Psychiat, Sao Paulo, SP, BrazilWeb of ScienceNational Institute of Developmental Psychiatry for Children and AdolescentsConselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPqNational Council for Scientific and Technological Development)Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESPResearch Support Foundation of the State of Sao PauloConselho Nacional de Desenvolvimento Científico e Tecnológico (CAPES)National Council for Scientific and Technological Development: 573974/2008-0FAPESP: 2008/57896-8CAPES: 10682/13-9Nature Publishing Group2020-08-21T16:59:53Z2020-08-21T16:59:53Z2016info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion-application/pdfhttp://dx.doi.org/10.1038/srep22851Scientific Reports. London, v. 6, p. -, 2016.10.1038/srep22851WOS000371466600001.pdf2045-2322https://repositorio.unifesp.br/handle/11600/57797WOS:000371466600001ark:/48912/001300001906nengScientific ReportsLondoninfo:eu-repo/semantics/openAccessLima, Leandro de AraujoFeio-dos-Santos, Ana CeciliaBelangero, Sintia Iole [UNIFESP]Gadelha, Ary [UNIFESP]Bressan, Rodrigo Affonseca [UNIFESP]Salum, Giovanni AbrahaoPan, Pedro Mario [UNIFESP]Moriyama, Tais Silveira [UNIFESP]Graeff-Martins, Ana SoledadeTamanaha, Ana Carina [UNIFESP]Alvarenga, PedroKrieger, Fernanda ValleFleitlich-Bilyk, BacyJackowski, Andrea Parolin [UNIFESP]Brietzke, Elisa [UNIFESP]Sato, Joao RicardoPolanczyk, Guilherme VanoniMari, Jair de Jesus [UNIFESP]Manfro, Gisele Gus [UNIFESP]do Rosario, Maria Conceicao [UNIFESP]Miguel, Euripedes ConstantinoPuga, Renato DavidTahira, Ana CarolinaSouza, Viviane NeriChile, ThaisGouveia, Gisele RodriguesSimoes, Sergio NeryChang, XiaoPellegrino, RenataTian, LifengGlessner, Joseph T.Hashimoto, Ronaldo FumioRohde, Luis Augusto [UNIFESP]Sleiman, Patrick M. A.Hakonarson, HakonBrentani, Helenareponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-08-01T11:21:20Zoai:repositorio.unifesp.br/:11600/57797Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-12-11T21:04:45.029838Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false |
dc.title.none.fl_str_mv |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder |
title |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder |
spellingShingle |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder Lima, Leandro de Araujo Lima, Leandro de Araujo |
title_short |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder |
title_full |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder |
title_fullStr |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder |
title_full_unstemmed |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder |
title_sort |
An integrative approach to investigate the respective roles of single-nucleotide variants and copy-number variants in Attention-Deficit/Hyperactivity Disorder |
author |
Lima, Leandro de Araujo |
author_facet |
Lima, Leandro de Araujo Lima, Leandro de Araujo Feio-dos-Santos, Ana Cecilia Belangero, Sintia Iole [UNIFESP] Gadelha, Ary [UNIFESP] Bressan, Rodrigo Affonseca [UNIFESP] Salum, Giovanni Abrahao Pan, Pedro Mario [UNIFESP] Moriyama, Tais Silveira [UNIFESP] Graeff-Martins, Ana Soledade Tamanaha, Ana Carina [UNIFESP] Alvarenga, Pedro Krieger, Fernanda Valle Fleitlich-Bilyk, Bacy Jackowski, Andrea Parolin [UNIFESP] Brietzke, Elisa [UNIFESP] Sato, Joao Ricardo Polanczyk, Guilherme Vanoni Mari, Jair de Jesus [UNIFESP] Manfro, Gisele Gus [UNIFESP] do Rosario, Maria Conceicao [UNIFESP] Miguel, Euripedes Constantino Puga, Renato David Tahira, Ana Carolina Souza, Viviane Neri Chile, Thais Gouveia, Gisele Rodrigues Simoes, Sergio Nery Chang, Xiao Pellegrino, Renata Tian, Lifeng Glessner, Joseph T. Hashimoto, Ronaldo Fumio Rohde, Luis Augusto [UNIFESP] Sleiman, Patrick M. A. Hakonarson, Hakon Brentani, Helena Feio-dos-Santos, Ana Cecilia Belangero, Sintia Iole [UNIFESP] Gadelha, Ary [UNIFESP] Bressan, Rodrigo Affonseca [UNIFESP] Salum, Giovanni Abrahao Pan, Pedro Mario [UNIFESP] Moriyama, Tais Silveira [UNIFESP] Graeff-Martins, Ana Soledade Tamanaha, Ana Carina [UNIFESP] Alvarenga, Pedro Krieger, Fernanda Valle Fleitlich-Bilyk, Bacy Jackowski, Andrea Parolin [UNIFESP] Brietzke, Elisa [UNIFESP] Sato, Joao Ricardo Polanczyk, Guilherme Vanoni Mari, Jair de Jesus [UNIFESP] Manfro, Gisele Gus [UNIFESP] do Rosario, Maria Conceicao [UNIFESP] Miguel, Euripedes Constantino Puga, Renato David Tahira, Ana Carolina Souza, Viviane Neri Chile, Thais Gouveia, Gisele Rodrigues Simoes, Sergio Nery Chang, Xiao Pellegrino, Renata Tian, Lifeng Glessner, Joseph T. Hashimoto, Ronaldo Fumio Rohde, Luis Augusto [UNIFESP] Sleiman, Patrick M. A. Hakonarson, Hakon Brentani, Helena |
author_role |
author |
author2 |
Feio-dos-Santos, Ana Cecilia Belangero, Sintia Iole [UNIFESP] Gadelha, Ary [UNIFESP] Bressan, Rodrigo Affonseca [UNIFESP] Salum, Giovanni Abrahao Pan, Pedro Mario [UNIFESP] Moriyama, Tais Silveira [UNIFESP] Graeff-Martins, Ana Soledade Tamanaha, Ana Carina [UNIFESP] Alvarenga, Pedro Krieger, Fernanda Valle Fleitlich-Bilyk, Bacy Jackowski, Andrea Parolin [UNIFESP] Brietzke, Elisa [UNIFESP] Sato, Joao Ricardo Polanczyk, Guilherme Vanoni Mari, Jair de Jesus [UNIFESP] Manfro, Gisele Gus [UNIFESP] do Rosario, Maria Conceicao [UNIFESP] Miguel, Euripedes Constantino Puga, Renato David Tahira, Ana Carolina Souza, Viviane Neri Chile, Thais Gouveia, Gisele Rodrigues Simoes, Sergio Nery Chang, Xiao Pellegrino, Renata Tian, Lifeng Glessner, Joseph T. Hashimoto, Ronaldo Fumio Rohde, Luis Augusto [UNIFESP] Sleiman, Patrick M. A. Hakonarson, Hakon Brentani, Helena |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Lima, Leandro de Araujo Feio-dos-Santos, Ana Cecilia Belangero, Sintia Iole [UNIFESP] Gadelha, Ary [UNIFESP] Bressan, Rodrigo Affonseca [UNIFESP] Salum, Giovanni Abrahao Pan, Pedro Mario [UNIFESP] Moriyama, Tais Silveira [UNIFESP] Graeff-Martins, Ana Soledade Tamanaha, Ana Carina [UNIFESP] Alvarenga, Pedro Krieger, Fernanda Valle Fleitlich-Bilyk, Bacy Jackowski, Andrea Parolin [UNIFESP] Brietzke, Elisa [UNIFESP] Sato, Joao Ricardo Polanczyk, Guilherme Vanoni Mari, Jair de Jesus [UNIFESP] Manfro, Gisele Gus [UNIFESP] do Rosario, Maria Conceicao [UNIFESP] Miguel, Euripedes Constantino Puga, Renato David Tahira, Ana Carolina Souza, Viviane Neri Chile, Thais Gouveia, Gisele Rodrigues Simoes, Sergio Nery Chang, Xiao Pellegrino, Renata Tian, Lifeng Glessner, Joseph T. Hashimoto, Ronaldo Fumio Rohde, Luis Augusto [UNIFESP] Sleiman, Patrick M. A. Hakonarson, Hakon Brentani, Helena |
description |
Many studies have attempted to investigate the genetic susceptibility of Attention-Deficit/Hyperactivity Disorder (ADHD), but without much success. The present study aimed to analyze both single-nucleotide and copy-number variants contributing to the genetic architecture of ADHD. We generated exome data from 30 Brazilian trios with sporadic ADHD. We also analyzed a Brazilian sample of 503 children/adolescent controls from a High Risk Cohort Study for the Development of Childhood Psychiatric Disorders, and also previously published results of five CNV studies and one GWAS meta-analysis of ADHD involving children/adolescents. The results from the Brazilian trios showed that cases with de novo SNVs tend not to have de novo CNVs and vice-versa. Although the sample size is small, we could also see that various comorbidities are more frequent in cases with only inherited variants. Moreover, using only genes expressed in brain, we constructed two "in silico" protein-protein interaction networks, one with genes from any analysis, and other with genes with hits in two analyses. Topological and functional analyses of genes in this network uncovered genes related to synapse, cell adhesion, glutamatergic and serotoninergic pathways, both confirming findings of previous studies and capturing new genes and genetic variants in these pathways. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016 2020-08-21T16:59:53Z 2020-08-21T16:59:53Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1038/srep22851 Scientific Reports. London, v. 6, p. -, 2016. 10.1038/srep22851 WOS000371466600001.pdf 2045-2322 https://repositorio.unifesp.br/handle/11600/57797 WOS:000371466600001 |
dc.identifier.dark.fl_str_mv |
ark:/48912/001300001906n |
url |
http://dx.doi.org/10.1038/srep22851 https://repositorio.unifesp.br/handle/11600/57797 |
identifier_str_mv |
Scientific Reports. London, v. 6, p. -, 2016. 10.1038/srep22851 WOS000371466600001.pdf 2045-2322 WOS:000371466600001 ark:/48912/001300001906n |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Scientific Reports |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
- application/pdf |
dc.coverage.none.fl_str_mv |
London |
dc.publisher.none.fl_str_mv |
Nature Publishing Group |
publisher.none.fl_str_mv |
Nature Publishing Group |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UNIFESP instname:Universidade Federal de São Paulo (UNIFESP) instacron:UNIFESP |
instname_str |
Universidade Federal de São Paulo (UNIFESP) |
instacron_str |
UNIFESP |
institution |
UNIFESP |
reponame_str |
Repositório Institucional da UNIFESP |
collection |
Repositório Institucional da UNIFESP |
repository.name.fl_str_mv |
Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP) |
repository.mail.fl_str_mv |
biblioteca.csp@unifesp.br |
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1822219244219138048 |
dc.identifier.doi.none.fl_str_mv |
10.1038/srep22851 |