Estudos das superfícies de Hirshfeld, docking molecular e análise de parâmetros farmacocinéticos de ADME de complexos de Níquel(II) com tiossemicarbazonas

Detalhes bibliográficos
Autor(a) principal: Souza, Rafael Aparecido Carvalho
Data de Publicação: 2022
Tipo de documento: Trabalho de conclusão de curso
Idioma: por
Título da fonte: Repositório Institucional da UFU
Texto Completo: https://repositorio.ufu.br/handle/123456789/34734
Resumo: Thiosemicarbazones (TSCs) are compounds that have diverse biological and pharmacological applications. Previous biological studies involving the antibacterial activity of Co(III), Cu(II) and Mn(II) complexes derived from TSCs revealed complexes with promising biological potential. Thus, the present study aimed to evaluate the theoretical antibacterial activity of Ni(II) complexes containing TSCs against five bacterial cultures (S. mutans, S. mitis, S. sanguinis, L. paracasei and E. faecalis) through of molecular docking and to analyze in silico the pharmacokinetic parameters of ADME. For these experiments two different types of Ni(II) complexes with tridentate ligands of the type 2-acetylpyridine-N(4)-R-thiosemicarbazone (Hatc-R) were used. The R group of the Hatc-R ligand was replaced by ethyl (Et, 1) and phenyl (Ph, 2), to form [Ni(atc-Et)2, 3] and [Ni(atc-Ph)2, 4] complexes. The analysis of the Hirshfeld surface of the complex 3 revealed that the supramolecular structure is stabilized by interactions of the type H···H, C···H/H···C, N··· H/H···N and S···H/H···S. Molecular docking studies of the free ligands 1 and 2 and metal complexes 3 and 4 were performed with the crystalline structures of the enzymes of the bacteria mentioned above and the results showed highly exergonic ΔG values that reveal good orientation and binding affinity. The complex 4 showed the best results among all compounds tested. The ΔG values for the 4 complex were –10.09 kcal mol–1 for L. paracasei, followed by –8.95 kcal mol–1 for S. mutans while the best value of ΔG of the 3 complex was –7.24 kcal mol–1 for L. paracasei. The results of the in silico study of ADME for 1, 2, 3 and 4 showed that these compounds are in accordance with the rules of Lipinski, Ghose, Veber and Egan, in addition to having good solubility and characteristics suitable for oral use. The compounds were also evaluated for human intestinal absorption (HIA), blood-brain barrier (BBB) penetration, inhibition of isoenzymes belonging to the CYP450 system and none of the compounds are able to cross the blood-brain barrier and inhibit CYP2D6 and CYP3A4 isoenzymes belonging to the CYP450 system. Thus, this study demonstrates that the compounds have a promising pharmacokinetic profile aiming their therapeutic application through antibacterial activity.
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spelling Estudos das superfícies de Hirshfeld, docking molecular e análise de parâmetros farmacocinéticos de ADME de complexos de Níquel(II) com tiossemicarbazonasNíquel(II)TiossemicarbazonasSuperfícies de HirshfeldDocking molecularADMECNPQ::CIENCIAS EXATAS E DA TERRAThiosemicarbazones (TSCs) are compounds that have diverse biological and pharmacological applications. Previous biological studies involving the antibacterial activity of Co(III), Cu(II) and Mn(II) complexes derived from TSCs revealed complexes with promising biological potential. Thus, the present study aimed to evaluate the theoretical antibacterial activity of Ni(II) complexes containing TSCs against five bacterial cultures (S. mutans, S. mitis, S. sanguinis, L. paracasei and E. faecalis) through of molecular docking and to analyze in silico the pharmacokinetic parameters of ADME. For these experiments two different types of Ni(II) complexes with tridentate ligands of the type 2-acetylpyridine-N(4)-R-thiosemicarbazone (Hatc-R) were used. The R group of the Hatc-R ligand was replaced by ethyl (Et, 1) and phenyl (Ph, 2), to form [Ni(atc-Et)2, 3] and [Ni(atc-Ph)2, 4] complexes. The analysis of the Hirshfeld surface of the complex 3 revealed that the supramolecular structure is stabilized by interactions of the type H···H, C···H/H···C, N··· H/H···N and S···H/H···S. Molecular docking studies of the free ligands 1 and 2 and metal complexes 3 and 4 were performed with the crystalline structures of the enzymes of the bacteria mentioned above and the results showed highly exergonic ΔG values that reveal good orientation and binding affinity. The complex 4 showed the best results among all compounds tested. The ΔG values for the 4 complex were –10.09 kcal mol–1 for L. paracasei, followed by –8.95 kcal mol–1 for S. mutans while the best value of ΔG of the 3 complex was –7.24 kcal mol–1 for L. paracasei. The results of the in silico study of ADME for 1, 2, 3 and 4 showed that these compounds are in accordance with the rules of Lipinski, Ghose, Veber and Egan, in addition to having good solubility and characteristics suitable for oral use. The compounds were also evaluated for human intestinal absorption (HIA), blood-brain barrier (BBB) penetration, inhibition of isoenzymes belonging to the CYP450 system and none of the compounds are able to cross the blood-brain barrier and inhibit CYP2D6 and CYP3A4 isoenzymes belonging to the CYP450 system. Thus, this study demonstrates that the compounds have a promising pharmacokinetic profile aiming their therapeutic application through antibacterial activity.CAPES - Coordenação de Aperfeiçoamento de Pessoal de Nível SuperiorTrabalho de Conclusão de Curso (Graduação)Tiossemicarbazonas (TSCs) são compostos que possuem diversas aplicações biológicas e farmacológicas. Estudos biológicos anteriores envolvendo a atividade antibacteriana de complexos de Co(III), Cu(II) e Mn(II) derivados de TSCs revelaram complexos com potencial biológico promissor. Assim, o presente estudo teve como objetivo avaliar a atividade antibacteriana teórica de complexos de Ni(II) contendo TSCs frente a cinco culturas bacterianas (S. mutans, S. mitis, S. sanguinis, L. paracasei e E. faecalis) por meio do docking molecular e analisar in silico os parâmetros farmacocinéticos de ADME. Para estes experimentos dois tipos diferentes de complexos de Ni(II) com ligantes tridentados do tipo 2-acetilpiridina-N(4)-R-tiossemicarbazona (Hatc-R) foram usados. O grupo R do ligante Hatc-R foi substituído por etil (Et, 1) e fenil (Ph, 2), para formar complexos do tipo [Ni(atc-Et)2, 3] e [Ni(atc-Ph)2, 4]. A análise da superfície de Hirshfeld do complexo 3 revelou que a estrutura supramolecular é estabilizada por interações do tipo H···H, C···H/H···C, N···H/H···N e S···H/H···S. Os estudos de docking molecular dos ligantes livres 1 e 2 e complexos metálicos 3 e 4 foram realizados com as estruturas cristalinas das enzimas das bactérias mencionadas acima e os resultados mostraram valores de ΔG altamente exergônico que revelam boa orientação e afinidade de ligação. O complexo 4 apresentou os melhores resultados entre todos os compostos testados. Os valores de ΔG para o complexo 4 foram de –10,09 kcal mol–1 para L. paracasei, seguida por –8,95 kcal mol–1 para S. mutans enquanto o melhor valor de ΔG do complexo 3 foi de –7,24 kcal mol–1 para L. paracasei. Os resultados do estudo in silico de ADME para 1, 2, 3 e 4 mostraram que estes compostos estão de acordo com as regras de Lipinski, Ghose, Veber e Egan, além de apresentarem boa solubilidade e características apropriadas para serem utilizadas por via oral. Os compostos também foram avaliados quanto à absorção intestinal humana (HIA), penetração na barreira hematoencefálica (BBB), inibição das isoenzimas pertencentes ao sistema CYP450 sendo que nenhum dos compostos são capazes de atravessar a barreira hematoencefálica e inibir as isoenzimas CYP2D6 e CYP3A4 pertencentes ao sistema CYP450. Assim, esse estudo demonstra que os compostos apresentam um perfil farmacocinético promissor visando sua aplicação terapêutica através da atividade antibacteriana.Universidade Federal de UberlândiaBrasilQuímicaOliveira, Carolina Gonçalveshttp://lattes.cnpq.br/7092893236728387Paixão, Drielly Aparecidahttp://lattes.cnpq.br/5334431133600987Comar Junior, Moacyrhttp://lattes.cnpq.br/3361280087783853Souza, Rafael Aparecido Carvalho2022-04-13T17:40:49Z2022-04-13T17:40:49Z2022-03-23info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/bachelorThesisapplication/pdfSOUZA, Rafael Aparecido Carvalho. Estudos das superfícies de Hirshfeld, docking molecular e análise de parâmetros farmacocinéticos de ADME de complexos de Níquel(II) com tiossemicarbazonas. 2022. 64 f. Trabalho de Conclusão de Curso (Graduação em Química) – Universidade Federal de Uberlândia, Uberlândia, 2022.https://repositorio.ufu.br/handle/123456789/34734porinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFUinstname:Universidade Federal de Uberlândia (UFU)instacron:UFU2022-04-14T06:27:33Zoai:repositorio.ufu.br:123456789/34734Repositório InstitucionalONGhttp://repositorio.ufu.br/oai/requestdiinf@dirbi.ufu.bropendoar:2022-04-14T06:27:33Repositório Institucional da UFU - Universidade Federal de Uberlândia (UFU)false
dc.title.none.fl_str_mv Estudos das superfícies de Hirshfeld, docking molecular e análise de parâmetros farmacocinéticos de ADME de complexos de Níquel(II) com tiossemicarbazonas
title Estudos das superfícies de Hirshfeld, docking molecular e análise de parâmetros farmacocinéticos de ADME de complexos de Níquel(II) com tiossemicarbazonas
spellingShingle Estudos das superfícies de Hirshfeld, docking molecular e análise de parâmetros farmacocinéticos de ADME de complexos de Níquel(II) com tiossemicarbazonas
Souza, Rafael Aparecido Carvalho
Níquel(II)
Tiossemicarbazonas
Superfícies de Hirshfeld
Docking molecular
ADME
CNPQ::CIENCIAS EXATAS E DA TERRA
title_short Estudos das superfícies de Hirshfeld, docking molecular e análise de parâmetros farmacocinéticos de ADME de complexos de Níquel(II) com tiossemicarbazonas
title_full Estudos das superfícies de Hirshfeld, docking molecular e análise de parâmetros farmacocinéticos de ADME de complexos de Níquel(II) com tiossemicarbazonas
title_fullStr Estudos das superfícies de Hirshfeld, docking molecular e análise de parâmetros farmacocinéticos de ADME de complexos de Níquel(II) com tiossemicarbazonas
title_full_unstemmed Estudos das superfícies de Hirshfeld, docking molecular e análise de parâmetros farmacocinéticos de ADME de complexos de Níquel(II) com tiossemicarbazonas
title_sort Estudos das superfícies de Hirshfeld, docking molecular e análise de parâmetros farmacocinéticos de ADME de complexos de Níquel(II) com tiossemicarbazonas
author Souza, Rafael Aparecido Carvalho
author_facet Souza, Rafael Aparecido Carvalho
author_role author
dc.contributor.none.fl_str_mv Oliveira, Carolina Gonçalves
http://lattes.cnpq.br/7092893236728387
Paixão, Drielly Aparecida
http://lattes.cnpq.br/5334431133600987
Comar Junior, Moacyr
http://lattes.cnpq.br/3361280087783853
dc.contributor.author.fl_str_mv Souza, Rafael Aparecido Carvalho
dc.subject.por.fl_str_mv Níquel(II)
Tiossemicarbazonas
Superfícies de Hirshfeld
Docking molecular
ADME
CNPQ::CIENCIAS EXATAS E DA TERRA
topic Níquel(II)
Tiossemicarbazonas
Superfícies de Hirshfeld
Docking molecular
ADME
CNPQ::CIENCIAS EXATAS E DA TERRA
description Thiosemicarbazones (TSCs) are compounds that have diverse biological and pharmacological applications. Previous biological studies involving the antibacterial activity of Co(III), Cu(II) and Mn(II) complexes derived from TSCs revealed complexes with promising biological potential. Thus, the present study aimed to evaluate the theoretical antibacterial activity of Ni(II) complexes containing TSCs against five bacterial cultures (S. mutans, S. mitis, S. sanguinis, L. paracasei and E. faecalis) through of molecular docking and to analyze in silico the pharmacokinetic parameters of ADME. For these experiments two different types of Ni(II) complexes with tridentate ligands of the type 2-acetylpyridine-N(4)-R-thiosemicarbazone (Hatc-R) were used. The R group of the Hatc-R ligand was replaced by ethyl (Et, 1) and phenyl (Ph, 2), to form [Ni(atc-Et)2, 3] and [Ni(atc-Ph)2, 4] complexes. The analysis of the Hirshfeld surface of the complex 3 revealed that the supramolecular structure is stabilized by interactions of the type H···H, C···H/H···C, N··· H/H···N and S···H/H···S. Molecular docking studies of the free ligands 1 and 2 and metal complexes 3 and 4 were performed with the crystalline structures of the enzymes of the bacteria mentioned above and the results showed highly exergonic ΔG values that reveal good orientation and binding affinity. The complex 4 showed the best results among all compounds tested. The ΔG values for the 4 complex were –10.09 kcal mol–1 for L. paracasei, followed by –8.95 kcal mol–1 for S. mutans while the best value of ΔG of the 3 complex was –7.24 kcal mol–1 for L. paracasei. The results of the in silico study of ADME for 1, 2, 3 and 4 showed that these compounds are in accordance with the rules of Lipinski, Ghose, Veber and Egan, in addition to having good solubility and characteristics suitable for oral use. The compounds were also evaluated for human intestinal absorption (HIA), blood-brain barrier (BBB) penetration, inhibition of isoenzymes belonging to the CYP450 system and none of the compounds are able to cross the blood-brain barrier and inhibit CYP2D6 and CYP3A4 isoenzymes belonging to the CYP450 system. Thus, this study demonstrates that the compounds have a promising pharmacokinetic profile aiming their therapeutic application through antibacterial activity.
publishDate 2022
dc.date.none.fl_str_mv 2022-04-13T17:40:49Z
2022-04-13T17:40:49Z
2022-03-23
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/bachelorThesis
format bachelorThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv SOUZA, Rafael Aparecido Carvalho. Estudos das superfícies de Hirshfeld, docking molecular e análise de parâmetros farmacocinéticos de ADME de complexos de Níquel(II) com tiossemicarbazonas. 2022. 64 f. Trabalho de Conclusão de Curso (Graduação em Química) – Universidade Federal de Uberlândia, Uberlândia, 2022.
https://repositorio.ufu.br/handle/123456789/34734
identifier_str_mv SOUZA, Rafael Aparecido Carvalho. Estudos das superfícies de Hirshfeld, docking molecular e análise de parâmetros farmacocinéticos de ADME de complexos de Níquel(II) com tiossemicarbazonas. 2022. 64 f. Trabalho de Conclusão de Curso (Graduação em Química) – Universidade Federal de Uberlândia, Uberlândia, 2022.
url https://repositorio.ufu.br/handle/123456789/34734
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Uberlândia
Brasil
Química
publisher.none.fl_str_mv Universidade Federal de Uberlândia
Brasil
Química
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFU
instname:Universidade Federal de Uberlândia (UFU)
instacron:UFU
instname_str Universidade Federal de Uberlândia (UFU)
instacron_str UFU
institution UFU
reponame_str Repositório Institucional da UFU
collection Repositório Institucional da UFU
repository.name.fl_str_mv Repositório Institucional da UFU - Universidade Federal de Uberlândia (UFU)
repository.mail.fl_str_mv diinf@dirbi.ufu.br
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