Everyman's guide to bacterial insertion sequences

Detalhes bibliográficos
Autor(a) principal: Siguier, Patricia
Data de Publicação: 2015
Outros Autores: Gourbeyre, Edith, Varani, Alessandro [UNESP], Ton-Hoang, Bao, Chandler, Michael
Tipo de documento: Capítulo de livro
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1128/9781555819217.ch26
http://hdl.handle.net/11449/206492
Resumo: We have divided this review into two major sections. In one, we have attempted to present an overview of our current understanding of prokaryotic insertion sequences (IS), their diversity in sequence, in organization and in mechanism, their distribution and impact on their host genome, and their relation to their eukaryotic cousins. We discuss several IS-related transposable elements (TE) which have been identified since the previous edition of Mobile DNA. These include IS that use single-strand DNA intermediates and their related domesticated relations, insertion sequences with a common region (ISCR), and integrative conjugative elements (ICE), which use IS-related transposases (Tpases) for excision and integration. Several more specialized chapters in this volume include additional detailed information concerning a number of these topics. One of the major conclusions from this section is that the frontiers between the different types of TE are becoming less clear as more are identified. In the second part, we have provided a detailed description of the expanding variety of IS, which we have divided into families for convenience. We emphasize that there is no quantitative measure of the weight of each of the criteria we use to define a family. Our perception of these families continues to evolve and families emerge regularly as more IS are added. This section is designed as an aid and a source of information for consultation by interested specialist readers.
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spelling Everyman's guide to bacterial insertion sequencesBacterial insertion sequencesDDE transposasesDEDD transposasesEukaryotic transposable elementsHUH transposasesOrphan insertion sequencesProkaryotic relativesWe have divided this review into two major sections. In one, we have attempted to present an overview of our current understanding of prokaryotic insertion sequences (IS), their diversity in sequence, in organization and in mechanism, their distribution and impact on their host genome, and their relation to their eukaryotic cousins. We discuss several IS-related transposable elements (TE) which have been identified since the previous edition of Mobile DNA. These include IS that use single-strand DNA intermediates and their related domesticated relations, insertion sequences with a common region (ISCR), and integrative conjugative elements (ICE), which use IS-related transposases (Tpases) for excision and integration. Several more specialized chapters in this volume include additional detailed information concerning a number of these topics. One of the major conclusions from this section is that the frontiers between the different types of TE are becoming less clear as more are identified. In the second part, we have provided a detailed description of the expanding variety of IS, which we have divided into families for convenience. We emphasize that there is no quantitative measure of the weight of each of the criteria we use to define a family. Our perception of these families continues to evolve and families emerge regularly as more IS are added. This section is designed as an aid and a source of information for consultation by interested specialist readers.Laboratoire de Microbiologie et Genetique Moleculaires CNRSDepartamento de Tecnologia, Faculdade de Ciencias Agrarias e Veterinarias de Jaboticabal UNESP - Univ. Estadual PaulistaDepartamento de Tecnologia, Faculdade de Ciencias Agrarias e Veterinarias de Jaboticabal UNESP - Univ. Estadual PaulistaCNRSUniversidade Estadual Paulista (Unesp)Siguier, PatriciaGourbeyre, EdithVarani, Alessandro [UNESP]Ton-Hoang, BaoChandler, Michael2021-06-25T10:33:08Z2021-06-25T10:33:08Z2015-05-26info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/bookPart555-590http://dx.doi.org/10.1128/9781555819217.ch26Mobile DNA III, p. 555-590.http://hdl.handle.net/11449/20649210.1128/9781555819217.ch262-s2.0-85085660414Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMobile DNA IIIinfo:eu-repo/semantics/openAccess2024-06-07T15:33:00Zoai:repositorio.unesp.br:11449/206492Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T22:15:54.423490Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Everyman's guide to bacterial insertion sequences
title Everyman's guide to bacterial insertion sequences
spellingShingle Everyman's guide to bacterial insertion sequences
Siguier, Patricia
Bacterial insertion sequences
DDE transposases
DEDD transposases
Eukaryotic transposable elements
HUH transposases
Orphan insertion sequences
Prokaryotic relatives
title_short Everyman's guide to bacterial insertion sequences
title_full Everyman's guide to bacterial insertion sequences
title_fullStr Everyman's guide to bacterial insertion sequences
title_full_unstemmed Everyman's guide to bacterial insertion sequences
title_sort Everyman's guide to bacterial insertion sequences
author Siguier, Patricia
author_facet Siguier, Patricia
Gourbeyre, Edith
Varani, Alessandro [UNESP]
Ton-Hoang, Bao
Chandler, Michael
author_role author
author2 Gourbeyre, Edith
Varani, Alessandro [UNESP]
Ton-Hoang, Bao
Chandler, Michael
author2_role author
author
author
author
dc.contributor.none.fl_str_mv CNRS
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Siguier, Patricia
Gourbeyre, Edith
Varani, Alessandro [UNESP]
Ton-Hoang, Bao
Chandler, Michael
dc.subject.por.fl_str_mv Bacterial insertion sequences
DDE transposases
DEDD transposases
Eukaryotic transposable elements
HUH transposases
Orphan insertion sequences
Prokaryotic relatives
topic Bacterial insertion sequences
DDE transposases
DEDD transposases
Eukaryotic transposable elements
HUH transposases
Orphan insertion sequences
Prokaryotic relatives
description We have divided this review into two major sections. In one, we have attempted to present an overview of our current understanding of prokaryotic insertion sequences (IS), their diversity in sequence, in organization and in mechanism, their distribution and impact on their host genome, and their relation to their eukaryotic cousins. We discuss several IS-related transposable elements (TE) which have been identified since the previous edition of Mobile DNA. These include IS that use single-strand DNA intermediates and their related domesticated relations, insertion sequences with a common region (ISCR), and integrative conjugative elements (ICE), which use IS-related transposases (Tpases) for excision and integration. Several more specialized chapters in this volume include additional detailed information concerning a number of these topics. One of the major conclusions from this section is that the frontiers between the different types of TE are becoming less clear as more are identified. In the second part, we have provided a detailed description of the expanding variety of IS, which we have divided into families for convenience. We emphasize that there is no quantitative measure of the weight of each of the criteria we use to define a family. Our perception of these families continues to evolve and families emerge regularly as more IS are added. This section is designed as an aid and a source of information for consultation by interested specialist readers.
publishDate 2015
dc.date.none.fl_str_mv 2015-05-26
2021-06-25T10:33:08Z
2021-06-25T10:33:08Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/bookPart
format bookPart
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1128/9781555819217.ch26
Mobile DNA III, p. 555-590.
http://hdl.handle.net/11449/206492
10.1128/9781555819217.ch26
2-s2.0-85085660414
url http://dx.doi.org/10.1128/9781555819217.ch26
http://hdl.handle.net/11449/206492
identifier_str_mv Mobile DNA III, p. 555-590.
10.1128/9781555819217.ch26
2-s2.0-85085660414
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Mobile DNA III
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 555-590
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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