Everyman's guide to bacterial insertion sequences
Autor(a) principal: | |
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Data de Publicação: | 2015 |
Outros Autores: | , , , |
Tipo de documento: | Capítulo de livro |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1128/9781555819217.ch26 http://hdl.handle.net/11449/206492 |
Resumo: | We have divided this review into two major sections. In one, we have attempted to present an overview of our current understanding of prokaryotic insertion sequences (IS), their diversity in sequence, in organization and in mechanism, their distribution and impact on their host genome, and their relation to their eukaryotic cousins. We discuss several IS-related transposable elements (TE) which have been identified since the previous edition of Mobile DNA. These include IS that use single-strand DNA intermediates and their related domesticated relations, insertion sequences with a common region (ISCR), and integrative conjugative elements (ICE), which use IS-related transposases (Tpases) for excision and integration. Several more specialized chapters in this volume include additional detailed information concerning a number of these topics. One of the major conclusions from this section is that the frontiers between the different types of TE are becoming less clear as more are identified. In the second part, we have provided a detailed description of the expanding variety of IS, which we have divided into families for convenience. We emphasize that there is no quantitative measure of the weight of each of the criteria we use to define a family. Our perception of these families continues to evolve and families emerge regularly as more IS are added. This section is designed as an aid and a source of information for consultation by interested specialist readers. |
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Everyman's guide to bacterial insertion sequencesBacterial insertion sequencesDDE transposasesDEDD transposasesEukaryotic transposable elementsHUH transposasesOrphan insertion sequencesProkaryotic relativesWe have divided this review into two major sections. In one, we have attempted to present an overview of our current understanding of prokaryotic insertion sequences (IS), their diversity in sequence, in organization and in mechanism, their distribution and impact on their host genome, and their relation to their eukaryotic cousins. We discuss several IS-related transposable elements (TE) which have been identified since the previous edition of Mobile DNA. These include IS that use single-strand DNA intermediates and their related domesticated relations, insertion sequences with a common region (ISCR), and integrative conjugative elements (ICE), which use IS-related transposases (Tpases) for excision and integration. Several more specialized chapters in this volume include additional detailed information concerning a number of these topics. One of the major conclusions from this section is that the frontiers between the different types of TE are becoming less clear as more are identified. In the second part, we have provided a detailed description of the expanding variety of IS, which we have divided into families for convenience. We emphasize that there is no quantitative measure of the weight of each of the criteria we use to define a family. Our perception of these families continues to evolve and families emerge regularly as more IS are added. This section is designed as an aid and a source of information for consultation by interested specialist readers.Laboratoire de Microbiologie et Genetique Moleculaires CNRSDepartamento de Tecnologia, Faculdade de Ciencias Agrarias e Veterinarias de Jaboticabal UNESP - Univ. Estadual PaulistaDepartamento de Tecnologia, Faculdade de Ciencias Agrarias e Veterinarias de Jaboticabal UNESP - Univ. Estadual PaulistaCNRSUniversidade Estadual Paulista (Unesp)Siguier, PatriciaGourbeyre, EdithVarani, Alessandro [UNESP]Ton-Hoang, BaoChandler, Michael2021-06-25T10:33:08Z2021-06-25T10:33:08Z2015-05-26info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/bookPart555-590http://dx.doi.org/10.1128/9781555819217.ch26Mobile DNA III, p. 555-590.http://hdl.handle.net/11449/20649210.1128/9781555819217.ch262-s2.0-85085660414Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMobile DNA IIIinfo:eu-repo/semantics/openAccess2024-06-07T15:33:00Zoai:repositorio.unesp.br:11449/206492Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T22:15:54.423490Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Everyman's guide to bacterial insertion sequences |
title |
Everyman's guide to bacterial insertion sequences |
spellingShingle |
Everyman's guide to bacterial insertion sequences Siguier, Patricia Bacterial insertion sequences DDE transposases DEDD transposases Eukaryotic transposable elements HUH transposases Orphan insertion sequences Prokaryotic relatives |
title_short |
Everyman's guide to bacterial insertion sequences |
title_full |
Everyman's guide to bacterial insertion sequences |
title_fullStr |
Everyman's guide to bacterial insertion sequences |
title_full_unstemmed |
Everyman's guide to bacterial insertion sequences |
title_sort |
Everyman's guide to bacterial insertion sequences |
author |
Siguier, Patricia |
author_facet |
Siguier, Patricia Gourbeyre, Edith Varani, Alessandro [UNESP] Ton-Hoang, Bao Chandler, Michael |
author_role |
author |
author2 |
Gourbeyre, Edith Varani, Alessandro [UNESP] Ton-Hoang, Bao Chandler, Michael |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
CNRS Universidade Estadual Paulista (Unesp) |
dc.contributor.author.fl_str_mv |
Siguier, Patricia Gourbeyre, Edith Varani, Alessandro [UNESP] Ton-Hoang, Bao Chandler, Michael |
dc.subject.por.fl_str_mv |
Bacterial insertion sequences DDE transposases DEDD transposases Eukaryotic transposable elements HUH transposases Orphan insertion sequences Prokaryotic relatives |
topic |
Bacterial insertion sequences DDE transposases DEDD transposases Eukaryotic transposable elements HUH transposases Orphan insertion sequences Prokaryotic relatives |
description |
We have divided this review into two major sections. In one, we have attempted to present an overview of our current understanding of prokaryotic insertion sequences (IS), their diversity in sequence, in organization and in mechanism, their distribution and impact on their host genome, and their relation to their eukaryotic cousins. We discuss several IS-related transposable elements (TE) which have been identified since the previous edition of Mobile DNA. These include IS that use single-strand DNA intermediates and their related domesticated relations, insertion sequences with a common region (ISCR), and integrative conjugative elements (ICE), which use IS-related transposases (Tpases) for excision and integration. Several more specialized chapters in this volume include additional detailed information concerning a number of these topics. One of the major conclusions from this section is that the frontiers between the different types of TE are becoming less clear as more are identified. In the second part, we have provided a detailed description of the expanding variety of IS, which we have divided into families for convenience. We emphasize that there is no quantitative measure of the weight of each of the criteria we use to define a family. Our perception of these families continues to evolve and families emerge regularly as more IS are added. This section is designed as an aid and a source of information for consultation by interested specialist readers. |
publishDate |
2015 |
dc.date.none.fl_str_mv |
2015-05-26 2021-06-25T10:33:08Z 2021-06-25T10:33:08Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/bookPart |
format |
bookPart |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1128/9781555819217.ch26 Mobile DNA III, p. 555-590. http://hdl.handle.net/11449/206492 10.1128/9781555819217.ch26 2-s2.0-85085660414 |
url |
http://dx.doi.org/10.1128/9781555819217.ch26 http://hdl.handle.net/11449/206492 |
identifier_str_mv |
Mobile DNA III, p. 555-590. 10.1128/9781555819217.ch26 2-s2.0-85085660414 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Mobile DNA III |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
555-590 |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128237744685056 |