Reconstruction and in silico analysis of new Marinobacter adhaerens t76_800 with potential for long-chain hydrocarbon bioremediation associated with marine environmental lipases

Detalhes bibliográficos
Autor(a) principal: Lopes, Erica Mendes [UNESP]
Data de Publicação: 2019
Outros Autores: Fernandes, Camila Cesário [UNESP], de Macedo Lemos, Eliana G. [UNESP], Kishi, Luciano Takeshi [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.margen.2019.04.010
http://hdl.handle.net/11449/189063
Resumo: Marinobacter is a Gammaproteobacterium and member of the family Alteromonadaceae. Some Marinobacter species degrade hydrocarbons and aromatic compounds, raising the possibility of applications in marine bioremediation. Using draft metagenome-assembled genomes from environmental DNA, it was possible to obtain the genome of Marinobacter adhaerens t76_800, from samples obtained during the Tara Oceans expedition. The 4,478,190 bp genome did not contain a plasmid. The genome contained 5580 genes and 49 RNAs. In silico analysis confirmed the presence of genes involved in bioremediation, lipases, as well as defense mechanisms. This microorganism has biotechnological potential and may be useful in bioremediation.
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spelling Reconstruction and in silico analysis of new Marinobacter adhaerens t76_800 with potential for long-chain hydrocarbon bioremediation associated with marine environmental lipasesBacteriocinsBiotechnological applicationsEctoniesHydrocarbons degradationMarine environmentMarinobacter is a Gammaproteobacterium and member of the family Alteromonadaceae. Some Marinobacter species degrade hydrocarbons and aromatic compounds, raising the possibility of applications in marine bioremediation. Using draft metagenome-assembled genomes from environmental DNA, it was possible to obtain the genome of Marinobacter adhaerens t76_800, from samples obtained during the Tara Oceans expedition. The 4,478,190 bp genome did not contain a plasmid. The genome contained 5580 genes and 49 RNAs. In silico analysis confirmed the presence of genes involved in bioremediation, lipases, as well as defense mechanisms. This microorganism has biotechnological potential and may be useful in bioremediation.Faculdade de Ciências Agrárias e Veterinárias UNESP – Univ Estadual Paulista Campus Jaboticabal Departamento de TecnologiaFaculdade de Ciências Agrárias e Veterinárias UNESP – Univ Estadual Paulista Campus Jaboticabal Departamento de TecnologiaUniversidade Estadual Paulista (Unesp)Lopes, Erica Mendes [UNESP]Fernandes, Camila Cesário [UNESP]de Macedo Lemos, Eliana G. [UNESP]Kishi, Luciano Takeshi [UNESP]2019-10-06T16:28:34Z2019-10-06T16:28:34Z2019-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1016/j.margen.2019.04.010Marine Genomics.1874-7787http://hdl.handle.net/11449/18906310.1016/j.margen.2019.04.0102-s2.0-85065130468Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMarine Genomicsinfo:eu-repo/semantics/openAccess2021-10-23T14:54:41Zoai:repositorio.unesp.br:11449/189063Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-23T14:54:41Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Reconstruction and in silico analysis of new Marinobacter adhaerens t76_800 with potential for long-chain hydrocarbon bioremediation associated with marine environmental lipases
title Reconstruction and in silico analysis of new Marinobacter adhaerens t76_800 with potential for long-chain hydrocarbon bioremediation associated with marine environmental lipases
spellingShingle Reconstruction and in silico analysis of new Marinobacter adhaerens t76_800 with potential for long-chain hydrocarbon bioremediation associated with marine environmental lipases
Lopes, Erica Mendes [UNESP]
Bacteriocins
Biotechnological applications
Ectonies
Hydrocarbons degradation
Marine environment
title_short Reconstruction and in silico analysis of new Marinobacter adhaerens t76_800 with potential for long-chain hydrocarbon bioremediation associated with marine environmental lipases
title_full Reconstruction and in silico analysis of new Marinobacter adhaerens t76_800 with potential for long-chain hydrocarbon bioremediation associated with marine environmental lipases
title_fullStr Reconstruction and in silico analysis of new Marinobacter adhaerens t76_800 with potential for long-chain hydrocarbon bioremediation associated with marine environmental lipases
title_full_unstemmed Reconstruction and in silico analysis of new Marinobacter adhaerens t76_800 with potential for long-chain hydrocarbon bioremediation associated with marine environmental lipases
title_sort Reconstruction and in silico analysis of new Marinobacter adhaerens t76_800 with potential for long-chain hydrocarbon bioremediation associated with marine environmental lipases
author Lopes, Erica Mendes [UNESP]
author_facet Lopes, Erica Mendes [UNESP]
Fernandes, Camila Cesário [UNESP]
de Macedo Lemos, Eliana G. [UNESP]
Kishi, Luciano Takeshi [UNESP]
author_role author
author2 Fernandes, Camila Cesário [UNESP]
de Macedo Lemos, Eliana G. [UNESP]
Kishi, Luciano Takeshi [UNESP]
author2_role author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Lopes, Erica Mendes [UNESP]
Fernandes, Camila Cesário [UNESP]
de Macedo Lemos, Eliana G. [UNESP]
Kishi, Luciano Takeshi [UNESP]
dc.subject.por.fl_str_mv Bacteriocins
Biotechnological applications
Ectonies
Hydrocarbons degradation
Marine environment
topic Bacteriocins
Biotechnological applications
Ectonies
Hydrocarbons degradation
Marine environment
description Marinobacter is a Gammaproteobacterium and member of the family Alteromonadaceae. Some Marinobacter species degrade hydrocarbons and aromatic compounds, raising the possibility of applications in marine bioremediation. Using draft metagenome-assembled genomes from environmental DNA, it was possible to obtain the genome of Marinobacter adhaerens t76_800, from samples obtained during the Tara Oceans expedition. The 4,478,190 bp genome did not contain a plasmid. The genome contained 5580 genes and 49 RNAs. In silico analysis confirmed the presence of genes involved in bioremediation, lipases, as well as defense mechanisms. This microorganism has biotechnological potential and may be useful in bioremediation.
publishDate 2019
dc.date.none.fl_str_mv 2019-10-06T16:28:34Z
2019-10-06T16:28:34Z
2019-01-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.margen.2019.04.010
Marine Genomics.
1874-7787
http://hdl.handle.net/11449/189063
10.1016/j.margen.2019.04.010
2-s2.0-85065130468
url http://dx.doi.org/10.1016/j.margen.2019.04.010
http://hdl.handle.net/11449/189063
identifier_str_mv Marine Genomics.
1874-7787
10.1016/j.margen.2019.04.010
2-s2.0-85065130468
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Marine Genomics
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1799965142308356096

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