Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves

Detalhes bibliográficos
Autor(a) principal: Chacon, Daisy Sotero
Data de Publicação: 2021
Outros Autores: Torres, Taffarel Melo, da Silva, Ivanice Bezerra, de Araújo, Thiago Ferreira, Roque, Alan de Araújo, Pinheiro, Francisco Ayrton Senna Domingos, Selegato, Denise, Pilon, Alan, Reginaldo, Fernanda Priscila Santos, da Costa, Cibele Tesser, Vilasboa, Johnatan, Freire, Rafael Teixeira, Voigt, Eduardo Luiz, Zuanazzi, José Angelo Silveira, Libonati, Renata, Rodrigues, Julia Abrantes, Santos, Filippe Lemos Maia, Scortecci, Kátia Castanho, Lopes, Norberto Peporine, Ferreira, Leandro De Santis, dos Santos, Leandro Vieira, Cavalheiro, Alberto José [UNESP], Fett-Neto, Arthur Germano, Giordani, Raquel Brandt
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.jare.2021.01.017
http://hdl.handle.net/11449/208426
Resumo: Introduction: Natural products of pharmaceutical interest often do not reach the drug market due to the associated low yields and difficult extraction. Knowledge of biosynthetic pathways is a key element in the development of biotechnological strategies for plant specialized metabolite production. The scarce studies regarding non-model plants impair advances in this field. Erythrina spp. are mainly used as central nervous system depressants in folk medicine and are important sources of bioactive tetracyclic benzylisoquinoline alkaloids, which can act on several pathology-related biological targets. Objective: Herein the purpose is to employ combined transcriptome and metabolome analyses (seeds and leaves) of a non-model medicinal Fabaceae species grown in its unique arid natural habitat. The study tries to propose a putative biosynthetic pathway for the bioactive alkaloids by using an omic integrated approach. Methods: The Next Generation Sequencing-based transcriptome (de novo RNA sequencing) was carried out in a Illumina NextSeq 500 platform. Regarding the targeted metabolite profiling, Nuclear Magnetic Resonance and the High-Performance Liquid Chromatography coupled to a micrOTOF-QII, High Resolution Mass Spectrometer, were used. Results: This detailed macro and micromolecular approach applied to seeds and leaves of E. velutina revealed 42 alkaloids by metabolome tools. Based on the combined evidence, 24 gene candidates were put together in a putative pathway leading to the singular alkaloid diversity of this species. Conclusion: These results contribute by indicating potential biotechnological targets Erythrina alkaloids biosynthesis as well as to improve molecular databases with omic data from a non-model medicinal plant. Furthermore, they reveal an interesting chemical diversity in Erythrina velutina harvested in Caatinga. Last, but not least, this data may also contribute to tap Brazilian biodiversity in a rational and sustainable fashion, promoting adequate public policies for preservation and protection of sensitive areas within the Caatinga.
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spelling Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leavesBenzylisoquinoline AlkaloidsCaatingaErythrina velutinaTargeted metabolite profileTranscriptomeIntroduction: Natural products of pharmaceutical interest often do not reach the drug market due to the associated low yields and difficult extraction. Knowledge of biosynthetic pathways is a key element in the development of biotechnological strategies for plant specialized metabolite production. The scarce studies regarding non-model plants impair advances in this field. Erythrina spp. are mainly used as central nervous system depressants in folk medicine and are important sources of bioactive tetracyclic benzylisoquinoline alkaloids, which can act on several pathology-related biological targets. Objective: Herein the purpose is to employ combined transcriptome and metabolome analyses (seeds and leaves) of a non-model medicinal Fabaceae species grown in its unique arid natural habitat. The study tries to propose a putative biosynthetic pathway for the bioactive alkaloids by using an omic integrated approach. Methods: The Next Generation Sequencing-based transcriptome (de novo RNA sequencing) was carried out in a Illumina NextSeq 500 platform. Regarding the targeted metabolite profiling, Nuclear Magnetic Resonance and the High-Performance Liquid Chromatography coupled to a micrOTOF-QII, High Resolution Mass Spectrometer, were used. Results: This detailed macro and micromolecular approach applied to seeds and leaves of E. velutina revealed 42 alkaloids by metabolome tools. Based on the combined evidence, 24 gene candidates were put together in a putative pathway leading to the singular alkaloid diversity of this species. Conclusion: These results contribute by indicating potential biotechnological targets Erythrina alkaloids biosynthesis as well as to improve molecular databases with omic data from a non-model medicinal plant. Furthermore, they reveal an interesting chemical diversity in Erythrina velutina harvested in Caatinga. Last, but not least, this data may also contribute to tap Brazilian biodiversity in a rational and sustainable fashion, promoting adequate public policies for preservation and protection of sensitive areas within the Caatinga.Department of Pharmacy Federal University of Rio Grande do Norte (UFRN)Bioinformatics Biostatistics and Computer Biology Nucleus Rural Federal University of the SemiaridInstitute for Sustainable Development and Environment, Dunas Park HerbariumMagnetic Resonance Center (CERM) University of FlorenceFaculty of Pharmaceutical Sciences of Ribeirão Preto University of São Paulo (FCFRP-USP)Plant Physiology Laboratory Center for Biotechnology and Department of Botany Federal University of Rio Grande do SulSignal and Information Processing for Sensing Systems Institute for Bioengineering of Catalonia (IBEC) Barcelona Institute of Science and TechnologyDepartment of Cell Biology and Genetics Center for Biosciences Federal University of Rio Grande do NorteLaboratory of Pharmacognosy Federal University of Rio Grande do SulDepartment of Meteorology Institute of Geoscience Federal University of Rio de JaneiroBrazilian Bioethanol Science and Technology Laboratory Brazilian Center for Research in Energy and Materials (CNPEM)Chemistry Institute São Paulo State University (UNESP)Chemistry Institute São Paulo State University (UNESP)Federal University of Rio Grande do Norte (UFRN)Rural Federal University of the SemiaridInstitute for Sustainable Development and EnvironmentUniversity of FlorenceUniversidade de São Paulo (USP)Federal University of Rio Grande do SulBarcelona Institute of Science and TechnologyFederal University of Rio Grande do NorteFederal University of Rio de JaneiroBrazilian Center for Research in Energy and Materials (CNPEM)Universidade Estadual Paulista (Unesp)Chacon, Daisy SoteroTorres, Taffarel Meloda Silva, Ivanice Bezerrade Araújo, Thiago FerreiraRoque, Alan de AraújoPinheiro, Francisco Ayrton Senna DomingosSelegato, DenisePilon, AlanReginaldo, Fernanda Priscila Santosda Costa, Cibele TesserVilasboa, JohnatanFreire, Rafael TeixeiraVoigt, Eduardo LuizZuanazzi, José Angelo SilveiraLibonati, RenataRodrigues, Julia AbrantesSantos, Filippe Lemos MaiaScortecci, Kátia CastanhoLopes, Norberto PeporineFerreira, Leandro De Santisdos Santos, Leandro VieiraCavalheiro, Alberto José [UNESP]Fett-Neto, Arthur GermanoGiordani, Raquel Brandt2021-06-25T11:12:01Z2021-06-25T11:12:01Z2021-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1016/j.jare.2021.01.017Journal of Advanced Research.2090-1232http://hdl.handle.net/11449/20842610.1016/j.jare.2021.01.0172-s2.0-85101200490Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Advanced Researchinfo:eu-repo/semantics/openAccess2021-10-23T19:02:10Zoai:repositorio.unesp.br:11449/208426Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T20:11:47.508256Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves
title Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves
spellingShingle Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves
Chacon, Daisy Sotero
Benzylisoquinoline Alkaloids
Caatinga
Erythrina velutina
Targeted metabolite profile
Transcriptome
title_short Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves
title_full Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves
title_fullStr Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves
title_full_unstemmed Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves
title_sort Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves
author Chacon, Daisy Sotero
author_facet Chacon, Daisy Sotero
Torres, Taffarel Melo
da Silva, Ivanice Bezerra
de Araújo, Thiago Ferreira
Roque, Alan de Araújo
Pinheiro, Francisco Ayrton Senna Domingos
Selegato, Denise
Pilon, Alan
Reginaldo, Fernanda Priscila Santos
da Costa, Cibele Tesser
Vilasboa, Johnatan
Freire, Rafael Teixeira
Voigt, Eduardo Luiz
Zuanazzi, José Angelo Silveira
Libonati, Renata
Rodrigues, Julia Abrantes
Santos, Filippe Lemos Maia
Scortecci, Kátia Castanho
Lopes, Norberto Peporine
Ferreira, Leandro De Santis
dos Santos, Leandro Vieira
Cavalheiro, Alberto José [UNESP]
Fett-Neto, Arthur Germano
Giordani, Raquel Brandt
author_role author
author2 Torres, Taffarel Melo
da Silva, Ivanice Bezerra
de Araújo, Thiago Ferreira
Roque, Alan de Araújo
Pinheiro, Francisco Ayrton Senna Domingos
Selegato, Denise
Pilon, Alan
Reginaldo, Fernanda Priscila Santos
da Costa, Cibele Tesser
Vilasboa, Johnatan
Freire, Rafael Teixeira
Voigt, Eduardo Luiz
Zuanazzi, José Angelo Silveira
Libonati, Renata
Rodrigues, Julia Abrantes
Santos, Filippe Lemos Maia
Scortecci, Kátia Castanho
Lopes, Norberto Peporine
Ferreira, Leandro De Santis
dos Santos, Leandro Vieira
Cavalheiro, Alberto José [UNESP]
Fett-Neto, Arthur Germano
Giordani, Raquel Brandt
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Federal University of Rio Grande do Norte (UFRN)
Rural Federal University of the Semiarid
Institute for Sustainable Development and Environment
University of Florence
Universidade de São Paulo (USP)
Federal University of Rio Grande do Sul
Barcelona Institute of Science and Technology
Federal University of Rio Grande do Norte
Federal University of Rio de Janeiro
Brazilian Center for Research in Energy and Materials (CNPEM)
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Chacon, Daisy Sotero
Torres, Taffarel Melo
da Silva, Ivanice Bezerra
de Araújo, Thiago Ferreira
Roque, Alan de Araújo
Pinheiro, Francisco Ayrton Senna Domingos
Selegato, Denise
Pilon, Alan
Reginaldo, Fernanda Priscila Santos
da Costa, Cibele Tesser
Vilasboa, Johnatan
Freire, Rafael Teixeira
Voigt, Eduardo Luiz
Zuanazzi, José Angelo Silveira
Libonati, Renata
Rodrigues, Julia Abrantes
Santos, Filippe Lemos Maia
Scortecci, Kátia Castanho
Lopes, Norberto Peporine
Ferreira, Leandro De Santis
dos Santos, Leandro Vieira
Cavalheiro, Alberto José [UNESP]
Fett-Neto, Arthur Germano
Giordani, Raquel Brandt
dc.subject.por.fl_str_mv Benzylisoquinoline Alkaloids
Caatinga
Erythrina velutina
Targeted metabolite profile
Transcriptome
topic Benzylisoquinoline Alkaloids
Caatinga
Erythrina velutina
Targeted metabolite profile
Transcriptome
description Introduction: Natural products of pharmaceutical interest often do not reach the drug market due to the associated low yields and difficult extraction. Knowledge of biosynthetic pathways is a key element in the development of biotechnological strategies for plant specialized metabolite production. The scarce studies regarding non-model plants impair advances in this field. Erythrina spp. are mainly used as central nervous system depressants in folk medicine and are important sources of bioactive tetracyclic benzylisoquinoline alkaloids, which can act on several pathology-related biological targets. Objective: Herein the purpose is to employ combined transcriptome and metabolome analyses (seeds and leaves) of a non-model medicinal Fabaceae species grown in its unique arid natural habitat. The study tries to propose a putative biosynthetic pathway for the bioactive alkaloids by using an omic integrated approach. Methods: The Next Generation Sequencing-based transcriptome (de novo RNA sequencing) was carried out in a Illumina NextSeq 500 platform. Regarding the targeted metabolite profiling, Nuclear Magnetic Resonance and the High-Performance Liquid Chromatography coupled to a micrOTOF-QII, High Resolution Mass Spectrometer, were used. Results: This detailed macro and micromolecular approach applied to seeds and leaves of E. velutina revealed 42 alkaloids by metabolome tools. Based on the combined evidence, 24 gene candidates were put together in a putative pathway leading to the singular alkaloid diversity of this species. Conclusion: These results contribute by indicating potential biotechnological targets Erythrina alkaloids biosynthesis as well as to improve molecular databases with omic data from a non-model medicinal plant. Furthermore, they reveal an interesting chemical diversity in Erythrina velutina harvested in Caatinga. Last, but not least, this data may also contribute to tap Brazilian biodiversity in a rational and sustainable fashion, promoting adequate public policies for preservation and protection of sensitive areas within the Caatinga.
publishDate 2021
dc.date.none.fl_str_mv 2021-06-25T11:12:01Z
2021-06-25T11:12:01Z
2021-01-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.jare.2021.01.017
Journal of Advanced Research.
2090-1232
http://hdl.handle.net/11449/208426
10.1016/j.jare.2021.01.017
2-s2.0-85101200490
url http://dx.doi.org/10.1016/j.jare.2021.01.017
http://hdl.handle.net/11449/208426
identifier_str_mv Journal of Advanced Research.
2090-1232
10.1016/j.jare.2021.01.017
2-s2.0-85101200490
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Journal of Advanced Research
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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