Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves
Autor(a) principal: | |
---|---|
Data de Publicação: | 2021 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1016/j.jare.2021.01.017 http://hdl.handle.net/11449/208426 |
Resumo: | Introduction: Natural products of pharmaceutical interest often do not reach the drug market due to the associated low yields and difficult extraction. Knowledge of biosynthetic pathways is a key element in the development of biotechnological strategies for plant specialized metabolite production. The scarce studies regarding non-model plants impair advances in this field. Erythrina spp. are mainly used as central nervous system depressants in folk medicine and are important sources of bioactive tetracyclic benzylisoquinoline alkaloids, which can act on several pathology-related biological targets. Objective: Herein the purpose is to employ combined transcriptome and metabolome analyses (seeds and leaves) of a non-model medicinal Fabaceae species grown in its unique arid natural habitat. The study tries to propose a putative biosynthetic pathway for the bioactive alkaloids by using an omic integrated approach. Methods: The Next Generation Sequencing-based transcriptome (de novo RNA sequencing) was carried out in a Illumina NextSeq 500 platform. Regarding the targeted metabolite profiling, Nuclear Magnetic Resonance and the High-Performance Liquid Chromatography coupled to a micrOTOF-QII, High Resolution Mass Spectrometer, were used. Results: This detailed macro and micromolecular approach applied to seeds and leaves of E. velutina revealed 42 alkaloids by metabolome tools. Based on the combined evidence, 24 gene candidates were put together in a putative pathway leading to the singular alkaloid diversity of this species. Conclusion: These results contribute by indicating potential biotechnological targets Erythrina alkaloids biosynthesis as well as to improve molecular databases with omic data from a non-model medicinal plant. Furthermore, they reveal an interesting chemical diversity in Erythrina velutina harvested in Caatinga. Last, but not least, this data may also contribute to tap Brazilian biodiversity in a rational and sustainable fashion, promoting adequate public policies for preservation and protection of sensitive areas within the Caatinga. |
id |
UNSP_1dfc0f4aea7565b8052e84d787e681f1 |
---|---|
oai_identifier_str |
oai:repositorio.unesp.br:11449/208426 |
network_acronym_str |
UNSP |
network_name_str |
Repositório Institucional da UNESP |
repository_id_str |
2946 |
spelling |
Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leavesBenzylisoquinoline AlkaloidsCaatingaErythrina velutinaTargeted metabolite profileTranscriptomeIntroduction: Natural products of pharmaceutical interest often do not reach the drug market due to the associated low yields and difficult extraction. Knowledge of biosynthetic pathways is a key element in the development of biotechnological strategies for plant specialized metabolite production. The scarce studies regarding non-model plants impair advances in this field. Erythrina spp. are mainly used as central nervous system depressants in folk medicine and are important sources of bioactive tetracyclic benzylisoquinoline alkaloids, which can act on several pathology-related biological targets. Objective: Herein the purpose is to employ combined transcriptome and metabolome analyses (seeds and leaves) of a non-model medicinal Fabaceae species grown in its unique arid natural habitat. The study tries to propose a putative biosynthetic pathway for the bioactive alkaloids by using an omic integrated approach. Methods: The Next Generation Sequencing-based transcriptome (de novo RNA sequencing) was carried out in a Illumina NextSeq 500 platform. Regarding the targeted metabolite profiling, Nuclear Magnetic Resonance and the High-Performance Liquid Chromatography coupled to a micrOTOF-QII, High Resolution Mass Spectrometer, were used. Results: This detailed macro and micromolecular approach applied to seeds and leaves of E. velutina revealed 42 alkaloids by metabolome tools. Based on the combined evidence, 24 gene candidates were put together in a putative pathway leading to the singular alkaloid diversity of this species. Conclusion: These results contribute by indicating potential biotechnological targets Erythrina alkaloids biosynthesis as well as to improve molecular databases with omic data from a non-model medicinal plant. Furthermore, they reveal an interesting chemical diversity in Erythrina velutina harvested in Caatinga. Last, but not least, this data may also contribute to tap Brazilian biodiversity in a rational and sustainable fashion, promoting adequate public policies for preservation and protection of sensitive areas within the Caatinga.Department of Pharmacy Federal University of Rio Grande do Norte (UFRN)Bioinformatics Biostatistics and Computer Biology Nucleus Rural Federal University of the SemiaridInstitute for Sustainable Development and Environment, Dunas Park HerbariumMagnetic Resonance Center (CERM) University of FlorenceFaculty of Pharmaceutical Sciences of Ribeirão Preto University of São Paulo (FCFRP-USP)Plant Physiology Laboratory Center for Biotechnology and Department of Botany Federal University of Rio Grande do SulSignal and Information Processing for Sensing Systems Institute for Bioengineering of Catalonia (IBEC) Barcelona Institute of Science and TechnologyDepartment of Cell Biology and Genetics Center for Biosciences Federal University of Rio Grande do NorteLaboratory of Pharmacognosy Federal University of Rio Grande do SulDepartment of Meteorology Institute of Geoscience Federal University of Rio de JaneiroBrazilian Bioethanol Science and Technology Laboratory Brazilian Center for Research in Energy and Materials (CNPEM)Chemistry Institute São Paulo State University (UNESP)Chemistry Institute São Paulo State University (UNESP)Federal University of Rio Grande do Norte (UFRN)Rural Federal University of the SemiaridInstitute for Sustainable Development and EnvironmentUniversity of FlorenceUniversidade de São Paulo (USP)Federal University of Rio Grande do SulBarcelona Institute of Science and TechnologyFederal University of Rio Grande do NorteFederal University of Rio de JaneiroBrazilian Center for Research in Energy and Materials (CNPEM)Universidade Estadual Paulista (Unesp)Chacon, Daisy SoteroTorres, Taffarel Meloda Silva, Ivanice Bezerrade Araújo, Thiago FerreiraRoque, Alan de AraújoPinheiro, Francisco Ayrton Senna DomingosSelegato, DenisePilon, AlanReginaldo, Fernanda Priscila Santosda Costa, Cibele TesserVilasboa, JohnatanFreire, Rafael TeixeiraVoigt, Eduardo LuizZuanazzi, José Angelo SilveiraLibonati, RenataRodrigues, Julia AbrantesSantos, Filippe Lemos MaiaScortecci, Kátia CastanhoLopes, Norberto PeporineFerreira, Leandro De Santisdos Santos, Leandro VieiraCavalheiro, Alberto José [UNESP]Fett-Neto, Arthur GermanoGiordani, Raquel Brandt2021-06-25T11:12:01Z2021-06-25T11:12:01Z2021-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1016/j.jare.2021.01.017Journal of Advanced Research.2090-1232http://hdl.handle.net/11449/20842610.1016/j.jare.2021.01.0172-s2.0-85101200490Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Advanced Researchinfo:eu-repo/semantics/openAccess2021-10-23T19:02:10Zoai:repositorio.unesp.br:11449/208426Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T20:11:47.508256Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves |
title |
Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves |
spellingShingle |
Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves Chacon, Daisy Sotero Benzylisoquinoline Alkaloids Caatinga Erythrina velutina Targeted metabolite profile Transcriptome |
title_short |
Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves |
title_full |
Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves |
title_fullStr |
Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves |
title_full_unstemmed |
Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves |
title_sort |
Erythrina velutina Willd. alkaloids: Piecing biosynthesis together from transcriptome analysis and metabolite profiling of seeds and leaves |
author |
Chacon, Daisy Sotero |
author_facet |
Chacon, Daisy Sotero Torres, Taffarel Melo da Silva, Ivanice Bezerra de Araújo, Thiago Ferreira Roque, Alan de Araújo Pinheiro, Francisco Ayrton Senna Domingos Selegato, Denise Pilon, Alan Reginaldo, Fernanda Priscila Santos da Costa, Cibele Tesser Vilasboa, Johnatan Freire, Rafael Teixeira Voigt, Eduardo Luiz Zuanazzi, José Angelo Silveira Libonati, Renata Rodrigues, Julia Abrantes Santos, Filippe Lemos Maia Scortecci, Kátia Castanho Lopes, Norberto Peporine Ferreira, Leandro De Santis dos Santos, Leandro Vieira Cavalheiro, Alberto José [UNESP] Fett-Neto, Arthur Germano Giordani, Raquel Brandt |
author_role |
author |
author2 |
Torres, Taffarel Melo da Silva, Ivanice Bezerra de Araújo, Thiago Ferreira Roque, Alan de Araújo Pinheiro, Francisco Ayrton Senna Domingos Selegato, Denise Pilon, Alan Reginaldo, Fernanda Priscila Santos da Costa, Cibele Tesser Vilasboa, Johnatan Freire, Rafael Teixeira Voigt, Eduardo Luiz Zuanazzi, José Angelo Silveira Libonati, Renata Rodrigues, Julia Abrantes Santos, Filippe Lemos Maia Scortecci, Kátia Castanho Lopes, Norberto Peporine Ferreira, Leandro De Santis dos Santos, Leandro Vieira Cavalheiro, Alberto José [UNESP] Fett-Neto, Arthur Germano Giordani, Raquel Brandt |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Federal University of Rio Grande do Norte (UFRN) Rural Federal University of the Semiarid Institute for Sustainable Development and Environment University of Florence Universidade de São Paulo (USP) Federal University of Rio Grande do Sul Barcelona Institute of Science and Technology Federal University of Rio Grande do Norte Federal University of Rio de Janeiro Brazilian Center for Research in Energy and Materials (CNPEM) Universidade Estadual Paulista (Unesp) |
dc.contributor.author.fl_str_mv |
Chacon, Daisy Sotero Torres, Taffarel Melo da Silva, Ivanice Bezerra de Araújo, Thiago Ferreira Roque, Alan de Araújo Pinheiro, Francisco Ayrton Senna Domingos Selegato, Denise Pilon, Alan Reginaldo, Fernanda Priscila Santos da Costa, Cibele Tesser Vilasboa, Johnatan Freire, Rafael Teixeira Voigt, Eduardo Luiz Zuanazzi, José Angelo Silveira Libonati, Renata Rodrigues, Julia Abrantes Santos, Filippe Lemos Maia Scortecci, Kátia Castanho Lopes, Norberto Peporine Ferreira, Leandro De Santis dos Santos, Leandro Vieira Cavalheiro, Alberto José [UNESP] Fett-Neto, Arthur Germano Giordani, Raquel Brandt |
dc.subject.por.fl_str_mv |
Benzylisoquinoline Alkaloids Caatinga Erythrina velutina Targeted metabolite profile Transcriptome |
topic |
Benzylisoquinoline Alkaloids Caatinga Erythrina velutina Targeted metabolite profile Transcriptome |
description |
Introduction: Natural products of pharmaceutical interest often do not reach the drug market due to the associated low yields and difficult extraction. Knowledge of biosynthetic pathways is a key element in the development of biotechnological strategies for plant specialized metabolite production. The scarce studies regarding non-model plants impair advances in this field. Erythrina spp. are mainly used as central nervous system depressants in folk medicine and are important sources of bioactive tetracyclic benzylisoquinoline alkaloids, which can act on several pathology-related biological targets. Objective: Herein the purpose is to employ combined transcriptome and metabolome analyses (seeds and leaves) of a non-model medicinal Fabaceae species grown in its unique arid natural habitat. The study tries to propose a putative biosynthetic pathway for the bioactive alkaloids by using an omic integrated approach. Methods: The Next Generation Sequencing-based transcriptome (de novo RNA sequencing) was carried out in a Illumina NextSeq 500 platform. Regarding the targeted metabolite profiling, Nuclear Magnetic Resonance and the High-Performance Liquid Chromatography coupled to a micrOTOF-QII, High Resolution Mass Spectrometer, were used. Results: This detailed macro and micromolecular approach applied to seeds and leaves of E. velutina revealed 42 alkaloids by metabolome tools. Based on the combined evidence, 24 gene candidates were put together in a putative pathway leading to the singular alkaloid diversity of this species. Conclusion: These results contribute by indicating potential biotechnological targets Erythrina alkaloids biosynthesis as well as to improve molecular databases with omic data from a non-model medicinal plant. Furthermore, they reveal an interesting chemical diversity in Erythrina velutina harvested in Caatinga. Last, but not least, this data may also contribute to tap Brazilian biodiversity in a rational and sustainable fashion, promoting adequate public policies for preservation and protection of sensitive areas within the Caatinga. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-06-25T11:12:01Z 2021-06-25T11:12:01Z 2021-01-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1016/j.jare.2021.01.017 Journal of Advanced Research. 2090-1232 http://hdl.handle.net/11449/208426 10.1016/j.jare.2021.01.017 2-s2.0-85101200490 |
url |
http://dx.doi.org/10.1016/j.jare.2021.01.017 http://hdl.handle.net/11449/208426 |
identifier_str_mv |
Journal of Advanced Research. 2090-1232 10.1016/j.jare.2021.01.017 2-s2.0-85101200490 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Journal of Advanced Research |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808129170469814272 |