Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant
Autor(a) principal: | |
---|---|
Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.3389/fpls.2022.947558 http://hdl.handle.net/11449/249173 |
Resumo: | Erythrina velutina is a Brazilian native tree of the Caatinga (a unique semiarid biome). It is widely used in traditional medicine showing anti-inflammatory and central nervous system modulating activities. The species is a rich source of specialized metabolites, mostly alkaloids and flavonoids. To date, genomic information, biosynthesis, and regulation of flavonoids remain unknown in this woody plant. As part of a larger ongoing research goal to better understand specialized metabolism in plants inhabiting the harsh conditions of the Caatinga, the present study focused on this important class of bioactive phenolics. Leaves and seeds of plants growing in their natural habitat had their metabolic and proteomic profiles analyzed and integrated with transcriptome data. As a result, 96 metabolites (including 43 flavonoids) were annotated. Transcripts of the flavonoid pathway totaled 27, of which EvCHI, EvCHR, EvCHS, EvCYP75A and EvCYP75B1 were identified as putative main targets for modulating the accumulation of these metabolites. The highest correspondence of mRNA vs. protein was observed in the differentially expressed transcripts. In addition, 394 candidate transcripts encoding for transcription factors distributed among the bHLH, ERF, and MYB families were annotated. Based on interaction network analyses, several putative genes of the flavonoid pathway and transcription factors were related, particularly TFs of the MYB family. Expression patterns of transcripts involved in flavonoid biosynthesis and those involved in responses to biotic and abiotic stresses were discussed in detail. Overall, these findings provide a base for the understanding of molecular and metabolic responses in this medicinally important species. Moreover, the identification of key regulatory targets for future studies aiming at bioactive metabolite production will be facilitated. |
id |
UNSP_7f8852c634b330fe3cdb0f6f486ad300 |
---|---|
oai_identifier_str |
oai:repositorio.unesp.br:11449/249173 |
network_acronym_str |
UNSP |
network_name_str |
Repositório Institucional da UNESP |
repository_id_str |
2946 |
spelling |
Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plantCaatingaErythrina velutinaflavonoidsmolecular networktranscriptomeErythrina velutina is a Brazilian native tree of the Caatinga (a unique semiarid biome). It is widely used in traditional medicine showing anti-inflammatory and central nervous system modulating activities. The species is a rich source of specialized metabolites, mostly alkaloids and flavonoids. To date, genomic information, biosynthesis, and regulation of flavonoids remain unknown in this woody plant. As part of a larger ongoing research goal to better understand specialized metabolism in plants inhabiting the harsh conditions of the Caatinga, the present study focused on this important class of bioactive phenolics. Leaves and seeds of plants growing in their natural habitat had their metabolic and proteomic profiles analyzed and integrated with transcriptome data. As a result, 96 metabolites (including 43 flavonoids) were annotated. Transcripts of the flavonoid pathway totaled 27, of which EvCHI, EvCHR, EvCHS, EvCYP75A and EvCYP75B1 were identified as putative main targets for modulating the accumulation of these metabolites. The highest correspondence of mRNA vs. protein was observed in the differentially expressed transcripts. In addition, 394 candidate transcripts encoding for transcription factors distributed among the bHLH, ERF, and MYB families were annotated. Based on interaction network analyses, several putative genes of the flavonoid pathway and transcription factors were related, particularly TFs of the MYB family. Expression patterns of transcripts involved in flavonoid biosynthesis and those involved in responses to biotic and abiotic stresses were discussed in detail. Overall, these findings provide a base for the understanding of molecular and metabolic responses in this medicinally important species. Moreover, the identification of key regulatory targets for future studies aiming at bioactive metabolite production will be facilitated.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Instituto Nacional de Ciência e Tecnologia em Biodiversidade e Produtos NaturaisInstituto SerrapilheiraDepartment of Pharmacy Federal University of Rio Grande do Norte (UFRN), RNComputational and Structural Proteomics Laboratory Carlos Chagas Institute, PRStanford Cardiovascular Institute Stanford University School of MedicinePlant Physiology Laboratory Center for Biotechnology and Department of Botany Federal University of Rio Grande do Sul, RSBioinformatics Biostatistics and Computer Biology Nucleus Rural Federal University of the Semiarid, RNInstitute for Sustainable Development and Environment, Dunas Park Herbarium, RNNPPNS Department of Biomolecular Sciences Faculty of Pharmaceutical Sciences of Ribeirão Preto University of São Paulo (FCFRP-USP), SPZimmermann Group European Molecular Biology Laboratory (EMBL) Structural and Computational Biology UnitSignal and Information Processing for Sensing Systems Institute for Bioengineering of Catalonia (IBEC) Barcelona Institute of Science and TechnologyInstitute of Biology Leiden UniversityDepartment of Cell Biology and Genetics Center for Biosciences Federal University of Rio Grande do Norte, RNLaboratory of Pharmacognosy Federal University of Rio Grande do Sul, RSChemistry Institute São Paulo State University (UNESP), SPGenetics and Molecular Biology Graduate Program Institute of Biology University of CampinasLaboratory of Protein Chemistry and Biochemistry Department of Cell Biology University of Brasilia, DFChemistry Institute São Paulo State University (UNESP), SPFederal University of Rio Grande do Norte (UFRN)Carlos Chagas InstituteStanford University School of MedicineFederal University of Rio Grande do SulRural Federal University of the SemiaridInstitute for Sustainable Development and EnvironmentUniversidade de São Paulo (USP)Structural and Computational Biology UnitBarcelona Institute of Science and TechnologyLeiden UniversityFederal University of Rio Grande do NorteUniversidade Estadual Paulista (UNESP)Universidade Estadual de Campinas (UNICAMP)University of BrasiliaChacon, Daisy SoteroSantos, Marlon Dias MarianoBonilauri, BernardoVilasboa, Johnatanda Costa, Cibele Tesserda Silva, Ivanice BezerraTorres, Taffarel de Melode Araújo, Thiago FerreiraRoque, Alan de AraújoPilon, Alan CesarSelegatto, Denise MedeirosFreire, Rafael TeixeiraReginaldo, Fernanda Priscila SantosVoigt, Eduardo LuizZuanazzi, José Angelo SilveiraScortecci, Kátia CastanhoCavalheiro, Alberto José [UNESP]Lopes, Norberto PeporineFerreira, Leandro De SantisSantos, Leandro Vieira dosFontes, WagnerSousa, Marcelo Valle deCarvalho, Paulo CostaFett-Neto, Arthur GermanoGiordani, Raquel Brandt2023-07-29T14:12:11Z2023-07-29T14:12:11Z2022-09-08info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3389/fpls.2022.947558Frontiers in Plant Science, v. 13.1664-462Xhttp://hdl.handle.net/11449/24917310.3389/fpls.2022.9475582-s2.0-85138522061Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengFrontiers in Plant Scienceinfo:eu-repo/semantics/openAccess2023-07-29T14:12:11Zoai:repositorio.unesp.br:11449/249173Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T21:04:19.079993Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant |
title |
Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant |
spellingShingle |
Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant Chacon, Daisy Sotero Caatinga Erythrina velutina flavonoids molecular network transcriptome |
title_short |
Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant |
title_full |
Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant |
title_fullStr |
Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant |
title_full_unstemmed |
Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant |
title_sort |
Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant |
author |
Chacon, Daisy Sotero |
author_facet |
Chacon, Daisy Sotero Santos, Marlon Dias Mariano Bonilauri, Bernardo Vilasboa, Johnatan da Costa, Cibele Tesser da Silva, Ivanice Bezerra Torres, Taffarel de Melo de Araújo, Thiago Ferreira Roque, Alan de Araújo Pilon, Alan Cesar Selegatto, Denise Medeiros Freire, Rafael Teixeira Reginaldo, Fernanda Priscila Santos Voigt, Eduardo Luiz Zuanazzi, José Angelo Silveira Scortecci, Kátia Castanho Cavalheiro, Alberto José [UNESP] Lopes, Norberto Peporine Ferreira, Leandro De Santis Santos, Leandro Vieira dos Fontes, Wagner Sousa, Marcelo Valle de Carvalho, Paulo Costa Fett-Neto, Arthur Germano Giordani, Raquel Brandt |
author_role |
author |
author2 |
Santos, Marlon Dias Mariano Bonilauri, Bernardo Vilasboa, Johnatan da Costa, Cibele Tesser da Silva, Ivanice Bezerra Torres, Taffarel de Melo de Araújo, Thiago Ferreira Roque, Alan de Araújo Pilon, Alan Cesar Selegatto, Denise Medeiros Freire, Rafael Teixeira Reginaldo, Fernanda Priscila Santos Voigt, Eduardo Luiz Zuanazzi, José Angelo Silveira Scortecci, Kátia Castanho Cavalheiro, Alberto José [UNESP] Lopes, Norberto Peporine Ferreira, Leandro De Santis Santos, Leandro Vieira dos Fontes, Wagner Sousa, Marcelo Valle de Carvalho, Paulo Costa Fett-Neto, Arthur Germano Giordani, Raquel Brandt |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Federal University of Rio Grande do Norte (UFRN) Carlos Chagas Institute Stanford University School of Medicine Federal University of Rio Grande do Sul Rural Federal University of the Semiarid Institute for Sustainable Development and Environment Universidade de São Paulo (USP) Structural and Computational Biology Unit Barcelona Institute of Science and Technology Leiden University Federal University of Rio Grande do Norte Universidade Estadual Paulista (UNESP) Universidade Estadual de Campinas (UNICAMP) University of Brasilia |
dc.contributor.author.fl_str_mv |
Chacon, Daisy Sotero Santos, Marlon Dias Mariano Bonilauri, Bernardo Vilasboa, Johnatan da Costa, Cibele Tesser da Silva, Ivanice Bezerra Torres, Taffarel de Melo de Araújo, Thiago Ferreira Roque, Alan de Araújo Pilon, Alan Cesar Selegatto, Denise Medeiros Freire, Rafael Teixeira Reginaldo, Fernanda Priscila Santos Voigt, Eduardo Luiz Zuanazzi, José Angelo Silveira Scortecci, Kátia Castanho Cavalheiro, Alberto José [UNESP] Lopes, Norberto Peporine Ferreira, Leandro De Santis Santos, Leandro Vieira dos Fontes, Wagner Sousa, Marcelo Valle de Carvalho, Paulo Costa Fett-Neto, Arthur Germano Giordani, Raquel Brandt |
dc.subject.por.fl_str_mv |
Caatinga Erythrina velutina flavonoids molecular network transcriptome |
topic |
Caatinga Erythrina velutina flavonoids molecular network transcriptome |
description |
Erythrina velutina is a Brazilian native tree of the Caatinga (a unique semiarid biome). It is widely used in traditional medicine showing anti-inflammatory and central nervous system modulating activities. The species is a rich source of specialized metabolites, mostly alkaloids and flavonoids. To date, genomic information, biosynthesis, and regulation of flavonoids remain unknown in this woody plant. As part of a larger ongoing research goal to better understand specialized metabolism in plants inhabiting the harsh conditions of the Caatinga, the present study focused on this important class of bioactive phenolics. Leaves and seeds of plants growing in their natural habitat had their metabolic and proteomic profiles analyzed and integrated with transcriptome data. As a result, 96 metabolites (including 43 flavonoids) were annotated. Transcripts of the flavonoid pathway totaled 27, of which EvCHI, EvCHR, EvCHS, EvCYP75A and EvCYP75B1 were identified as putative main targets for modulating the accumulation of these metabolites. The highest correspondence of mRNA vs. protein was observed in the differentially expressed transcripts. In addition, 394 candidate transcripts encoding for transcription factors distributed among the bHLH, ERF, and MYB families were annotated. Based on interaction network analyses, several putative genes of the flavonoid pathway and transcription factors were related, particularly TFs of the MYB family. Expression patterns of transcripts involved in flavonoid biosynthesis and those involved in responses to biotic and abiotic stresses were discussed in detail. Overall, these findings provide a base for the understanding of molecular and metabolic responses in this medicinally important species. Moreover, the identification of key regulatory targets for future studies aiming at bioactive metabolite production will be facilitated. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-09-08 2023-07-29T14:12:11Z 2023-07-29T14:12:11Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.3389/fpls.2022.947558 Frontiers in Plant Science, v. 13. 1664-462X http://hdl.handle.net/11449/249173 10.3389/fpls.2022.947558 2-s2.0-85138522061 |
url |
http://dx.doi.org/10.3389/fpls.2022.947558 http://hdl.handle.net/11449/249173 |
identifier_str_mv |
Frontiers in Plant Science, v. 13. 1664-462X 10.3389/fpls.2022.947558 2-s2.0-85138522061 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Frontiers in Plant Science |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808129280862846976 |