Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant

Detalhes bibliográficos
Autor(a) principal: Chacon, Daisy Sotero
Data de Publicação: 2022
Outros Autores: Santos, Marlon Dias Mariano, Bonilauri, Bernardo, Vilasboa, Johnatan, da Costa, Cibele Tesser, da Silva, Ivanice Bezerra, Torres, Taffarel de Melo, de Araújo, Thiago Ferreira, Roque, Alan de Araújo, Pilon, Alan Cesar, Selegatto, Denise Medeiros, Freire, Rafael Teixeira, Reginaldo, Fernanda Priscila Santos, Voigt, Eduardo Luiz, Zuanazzi, José Angelo Silveira, Scortecci, Kátia Castanho, Cavalheiro, Alberto José [UNESP], Lopes, Norberto Peporine, Ferreira, Leandro De Santis, Santos, Leandro Vieira dos, Fontes, Wagner, Sousa, Marcelo Valle de, Carvalho, Paulo Costa, Fett-Neto, Arthur Germano, Giordani, Raquel Brandt
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3389/fpls.2022.947558
http://hdl.handle.net/11449/249173
Resumo: Erythrina velutina is a Brazilian native tree of the Caatinga (a unique semiarid biome). It is widely used in traditional medicine showing anti-inflammatory and central nervous system modulating activities. The species is a rich source of specialized metabolites, mostly alkaloids and flavonoids. To date, genomic information, biosynthesis, and regulation of flavonoids remain unknown in this woody plant. As part of a larger ongoing research goal to better understand specialized metabolism in plants inhabiting the harsh conditions of the Caatinga, the present study focused on this important class of bioactive phenolics. Leaves and seeds of plants growing in their natural habitat had their metabolic and proteomic profiles analyzed and integrated with transcriptome data. As a result, 96 metabolites (including 43 flavonoids) were annotated. Transcripts of the flavonoid pathway totaled 27, of which EvCHI, EvCHR, EvCHS, EvCYP75A and EvCYP75B1 were identified as putative main targets for modulating the accumulation of these metabolites. The highest correspondence of mRNA vs. protein was observed in the differentially expressed transcripts. In addition, 394 candidate transcripts encoding for transcription factors distributed among the bHLH, ERF, and MYB families were annotated. Based on interaction network analyses, several putative genes of the flavonoid pathway and transcription factors were related, particularly TFs of the MYB family. Expression patterns of transcripts involved in flavonoid biosynthesis and those involved in responses to biotic and abiotic stresses were discussed in detail. Overall, these findings provide a base for the understanding of molecular and metabolic responses in this medicinally important species. Moreover, the identification of key regulatory targets for future studies aiming at bioactive metabolite production will be facilitated.
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spelling Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plantCaatingaErythrina velutinaflavonoidsmolecular networktranscriptomeErythrina velutina is a Brazilian native tree of the Caatinga (a unique semiarid biome). It is widely used in traditional medicine showing anti-inflammatory and central nervous system modulating activities. The species is a rich source of specialized metabolites, mostly alkaloids and flavonoids. To date, genomic information, biosynthesis, and regulation of flavonoids remain unknown in this woody plant. As part of a larger ongoing research goal to better understand specialized metabolism in plants inhabiting the harsh conditions of the Caatinga, the present study focused on this important class of bioactive phenolics. Leaves and seeds of plants growing in their natural habitat had their metabolic and proteomic profiles analyzed and integrated with transcriptome data. As a result, 96 metabolites (including 43 flavonoids) were annotated. Transcripts of the flavonoid pathway totaled 27, of which EvCHI, EvCHR, EvCHS, EvCYP75A and EvCYP75B1 were identified as putative main targets for modulating the accumulation of these metabolites. The highest correspondence of mRNA vs. protein was observed in the differentially expressed transcripts. In addition, 394 candidate transcripts encoding for transcription factors distributed among the bHLH, ERF, and MYB families were annotated. Based on interaction network analyses, several putative genes of the flavonoid pathway and transcription factors were related, particularly TFs of the MYB family. Expression patterns of transcripts involved in flavonoid biosynthesis and those involved in responses to biotic and abiotic stresses were discussed in detail. Overall, these findings provide a base for the understanding of molecular and metabolic responses in this medicinally important species. Moreover, the identification of key regulatory targets for future studies aiming at bioactive metabolite production will be facilitated.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Instituto Nacional de Ciência e Tecnologia em Biodiversidade e Produtos NaturaisInstituto SerrapilheiraDepartment of Pharmacy Federal University of Rio Grande do Norte (UFRN), RNComputational and Structural Proteomics Laboratory Carlos Chagas Institute, PRStanford Cardiovascular Institute Stanford University School of MedicinePlant Physiology Laboratory Center for Biotechnology and Department of Botany Federal University of Rio Grande do Sul, RSBioinformatics Biostatistics and Computer Biology Nucleus Rural Federal University of the Semiarid, RNInstitute for Sustainable Development and Environment, Dunas Park Herbarium, RNNPPNS Department of Biomolecular Sciences Faculty of Pharmaceutical Sciences of Ribeirão Preto University of São Paulo (FCFRP-USP), SPZimmermann Group European Molecular Biology Laboratory (EMBL) Structural and Computational Biology UnitSignal and Information Processing for Sensing Systems Institute for Bioengineering of Catalonia (IBEC) Barcelona Institute of Science and TechnologyInstitute of Biology Leiden UniversityDepartment of Cell Biology and Genetics Center for Biosciences Federal University of Rio Grande do Norte, RNLaboratory of Pharmacognosy Federal University of Rio Grande do Sul, RSChemistry Institute São Paulo State University (UNESP), SPGenetics and Molecular Biology Graduate Program Institute of Biology University of CampinasLaboratory of Protein Chemistry and Biochemistry Department of Cell Biology University of Brasilia, DFChemistry Institute São Paulo State University (UNESP), SPFederal University of Rio Grande do Norte (UFRN)Carlos Chagas InstituteStanford University School of MedicineFederal University of Rio Grande do SulRural Federal University of the SemiaridInstitute for Sustainable Development and EnvironmentUniversidade de São Paulo (USP)Structural and Computational Biology UnitBarcelona Institute of Science and TechnologyLeiden UniversityFederal University of Rio Grande do NorteUniversidade Estadual Paulista (UNESP)Universidade Estadual de Campinas (UNICAMP)University of BrasiliaChacon, Daisy SoteroSantos, Marlon Dias MarianoBonilauri, BernardoVilasboa, Johnatanda Costa, Cibele Tesserda Silva, Ivanice BezerraTorres, Taffarel de Melode Araújo, Thiago FerreiraRoque, Alan de AraújoPilon, Alan CesarSelegatto, Denise MedeirosFreire, Rafael TeixeiraReginaldo, Fernanda Priscila SantosVoigt, Eduardo LuizZuanazzi, José Angelo SilveiraScortecci, Kátia CastanhoCavalheiro, Alberto José [UNESP]Lopes, Norberto PeporineFerreira, Leandro De SantisSantos, Leandro Vieira dosFontes, WagnerSousa, Marcelo Valle deCarvalho, Paulo CostaFett-Neto, Arthur GermanoGiordani, Raquel Brandt2023-07-29T14:12:11Z2023-07-29T14:12:11Z2022-09-08info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3389/fpls.2022.947558Frontiers in Plant Science, v. 13.1664-462Xhttp://hdl.handle.net/11449/24917310.3389/fpls.2022.9475582-s2.0-85138522061Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengFrontiers in Plant Scienceinfo:eu-repo/semantics/openAccess2023-07-29T14:12:11Zoai:repositorio.unesp.br:11449/249173Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T21:04:19.079993Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant
title Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant
spellingShingle Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant
Chacon, Daisy Sotero
Caatinga
Erythrina velutina
flavonoids
molecular network
transcriptome
title_short Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant
title_full Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant
title_fullStr Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant
title_full_unstemmed Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant
title_sort Non-target molecular network and putative genes of flavonoid biosynthesis in Erythrina velutina Willd., a Brazilian semiarid native woody plant
author Chacon, Daisy Sotero
author_facet Chacon, Daisy Sotero
Santos, Marlon Dias Mariano
Bonilauri, Bernardo
Vilasboa, Johnatan
da Costa, Cibele Tesser
da Silva, Ivanice Bezerra
Torres, Taffarel de Melo
de Araújo, Thiago Ferreira
Roque, Alan de Araújo
Pilon, Alan Cesar
Selegatto, Denise Medeiros
Freire, Rafael Teixeira
Reginaldo, Fernanda Priscila Santos
Voigt, Eduardo Luiz
Zuanazzi, José Angelo Silveira
Scortecci, Kátia Castanho
Cavalheiro, Alberto José [UNESP]
Lopes, Norberto Peporine
Ferreira, Leandro De Santis
Santos, Leandro Vieira dos
Fontes, Wagner
Sousa, Marcelo Valle de
Carvalho, Paulo Costa
Fett-Neto, Arthur Germano
Giordani, Raquel Brandt
author_role author
author2 Santos, Marlon Dias Mariano
Bonilauri, Bernardo
Vilasboa, Johnatan
da Costa, Cibele Tesser
da Silva, Ivanice Bezerra
Torres, Taffarel de Melo
de Araújo, Thiago Ferreira
Roque, Alan de Araújo
Pilon, Alan Cesar
Selegatto, Denise Medeiros
Freire, Rafael Teixeira
Reginaldo, Fernanda Priscila Santos
Voigt, Eduardo Luiz
Zuanazzi, José Angelo Silveira
Scortecci, Kátia Castanho
Cavalheiro, Alberto José [UNESP]
Lopes, Norberto Peporine
Ferreira, Leandro De Santis
Santos, Leandro Vieira dos
Fontes, Wagner
Sousa, Marcelo Valle de
Carvalho, Paulo Costa
Fett-Neto, Arthur Germano
Giordani, Raquel Brandt
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Federal University of Rio Grande do Norte (UFRN)
Carlos Chagas Institute
Stanford University School of Medicine
Federal University of Rio Grande do Sul
Rural Federal University of the Semiarid
Institute for Sustainable Development and Environment
Universidade de São Paulo (USP)
Structural and Computational Biology Unit
Barcelona Institute of Science and Technology
Leiden University
Federal University of Rio Grande do Norte
Universidade Estadual Paulista (UNESP)
Universidade Estadual de Campinas (UNICAMP)
University of Brasilia
dc.contributor.author.fl_str_mv Chacon, Daisy Sotero
Santos, Marlon Dias Mariano
Bonilauri, Bernardo
Vilasboa, Johnatan
da Costa, Cibele Tesser
da Silva, Ivanice Bezerra
Torres, Taffarel de Melo
de Araújo, Thiago Ferreira
Roque, Alan de Araújo
Pilon, Alan Cesar
Selegatto, Denise Medeiros
Freire, Rafael Teixeira
Reginaldo, Fernanda Priscila Santos
Voigt, Eduardo Luiz
Zuanazzi, José Angelo Silveira
Scortecci, Kátia Castanho
Cavalheiro, Alberto José [UNESP]
Lopes, Norberto Peporine
Ferreira, Leandro De Santis
Santos, Leandro Vieira dos
Fontes, Wagner
Sousa, Marcelo Valle de
Carvalho, Paulo Costa
Fett-Neto, Arthur Germano
Giordani, Raquel Brandt
dc.subject.por.fl_str_mv Caatinga
Erythrina velutina
flavonoids
molecular network
transcriptome
topic Caatinga
Erythrina velutina
flavonoids
molecular network
transcriptome
description Erythrina velutina is a Brazilian native tree of the Caatinga (a unique semiarid biome). It is widely used in traditional medicine showing anti-inflammatory and central nervous system modulating activities. The species is a rich source of specialized metabolites, mostly alkaloids and flavonoids. To date, genomic information, biosynthesis, and regulation of flavonoids remain unknown in this woody plant. As part of a larger ongoing research goal to better understand specialized metabolism in plants inhabiting the harsh conditions of the Caatinga, the present study focused on this important class of bioactive phenolics. Leaves and seeds of plants growing in their natural habitat had their metabolic and proteomic profiles analyzed and integrated with transcriptome data. As a result, 96 metabolites (including 43 flavonoids) were annotated. Transcripts of the flavonoid pathway totaled 27, of which EvCHI, EvCHR, EvCHS, EvCYP75A and EvCYP75B1 were identified as putative main targets for modulating the accumulation of these metabolites. The highest correspondence of mRNA vs. protein was observed in the differentially expressed transcripts. In addition, 394 candidate transcripts encoding for transcription factors distributed among the bHLH, ERF, and MYB families were annotated. Based on interaction network analyses, several putative genes of the flavonoid pathway and transcription factors were related, particularly TFs of the MYB family. Expression patterns of transcripts involved in flavonoid biosynthesis and those involved in responses to biotic and abiotic stresses were discussed in detail. Overall, these findings provide a base for the understanding of molecular and metabolic responses in this medicinally important species. Moreover, the identification of key regulatory targets for future studies aiming at bioactive metabolite production will be facilitated.
publishDate 2022
dc.date.none.fl_str_mv 2022-09-08
2023-07-29T14:12:11Z
2023-07-29T14:12:11Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3389/fpls.2022.947558
Frontiers in Plant Science, v. 13.
1664-462X
http://hdl.handle.net/11449/249173
10.3389/fpls.2022.947558
2-s2.0-85138522061
url http://dx.doi.org/10.3389/fpls.2022.947558
http://hdl.handle.net/11449/249173
identifier_str_mv Frontiers in Plant Science, v. 13.
1664-462X
10.3389/fpls.2022.947558
2-s2.0-85138522061
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Frontiers in Plant Science
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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