Lymphoma images analysis using morphological and non-morphological descriptors for classification

Detalhes bibliográficos
Autor(a) principal: do Nascimento, Marcelo Zanchetta
Data de Publicação: 2018
Outros Autores: Martins, Alessandro Santana, Azevedo Tosta, Thaína Aparecida, Neves, Leandro Alves [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.cmpb.2018.05.035
http://hdl.handle.net/11449/176402
Resumo: Mantle cell lymphoma, follicular lymphoma and chronic lymphocytic leukemia are the principle subtypes of the non-Hodgkin lymphomas. The diversity of clinical presentations and the histopathological features have made diagnosis of such lymphomas a complex task for specialists. Computer aided diagnosis systems employ computational vision and image processing techniques, which contribute toward the detection, diagnosis and prognosis of digitised images of histological samples. Studies aimed at improving the understanding of morphological and non-morphological features for classification of lymphoma remain a challenge in this area. This work presents a new approach for the classification of information extracted from morphological and non-morphological features of nuclei of lymphoma images. We extracted data of the RGB model of the image and employed contrast limited adaptive histogram equalisation and 2D order-statistics filter methods to enhance the contrast and remove noise. The regions of interest were identified by the global thresholding method. The flood-fill and watershed techniques were used to remove the small false positive regions. The area, extent, perimeter, convex area, solidity, eccentricity, equivalent diameter, minor axis and major axis measurements were computed for the regions detected in the nuclei. In the feature selection stage, we applied the ANOVA, Ansari-Bradley and Wilcoxon rank sum methods. Finally, we employed the polynomial, support vector machine, random forest and decision tree classifiers in order to evaluate the performance of the proposed approach. The non-morphological features achieved higher AUC and AC values for all cases: the obtained rates were between 95% and 100%. These results are relevant, especially when we consider the difficulties of clinical practice in distinguishing the studied groups. The proposed approach is useful as an automated protocol for the diagnosis of lymphoma histological tissue.
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spelling Lymphoma images analysis using morphological and non-morphological descriptors for classificationHistological imageLymphomaMorphological and non-morphological featuresPolynomialSVMMantle cell lymphoma, follicular lymphoma and chronic lymphocytic leukemia are the principle subtypes of the non-Hodgkin lymphomas. The diversity of clinical presentations and the histopathological features have made diagnosis of such lymphomas a complex task for specialists. Computer aided diagnosis systems employ computational vision and image processing techniques, which contribute toward the detection, diagnosis and prognosis of digitised images of histological samples. Studies aimed at improving the understanding of morphological and non-morphological features for classification of lymphoma remain a challenge in this area. This work presents a new approach for the classification of information extracted from morphological and non-morphological features of nuclei of lymphoma images. We extracted data of the RGB model of the image and employed contrast limited adaptive histogram equalisation and 2D order-statistics filter methods to enhance the contrast and remove noise. The regions of interest were identified by the global thresholding method. The flood-fill and watershed techniques were used to remove the small false positive regions. The area, extent, perimeter, convex area, solidity, eccentricity, equivalent diameter, minor axis and major axis measurements were computed for the regions detected in the nuclei. In the feature selection stage, we applied the ANOVA, Ansari-Bradley and Wilcoxon rank sum methods. Finally, we employed the polynomial, support vector machine, random forest and decision tree classifiers in order to evaluate the performance of the proposed approach. The non-morphological features achieved higher AUC and AC values for all cases: the obtained rates were between 95% and 100%. These results are relevant, especially when we consider the difficulties of clinical practice in distinguishing the studied groups. The proposed approach is useful as an automated protocol for the diagnosis of lymphoma histological tissue.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG)UFU - FACOM, av. João Neves de Ávila 2121, Bl.BIFTM, r. Belarmino Vilela Junqueira S/NUFABC - CMCC, av. dos Estados 5001, Bl.BUNESP - DCCE, r. Cristóvão Colombo 2265UNESP - DCCE, r. Cristóvão Colombo 2265CNPq: 427114/2016-0FAPEMIG: TEC-APQ-02885-15UFU - FACOMIFTMUniversidade Federal do ABC (UFABC)Universidade Estadual Paulista (Unesp)do Nascimento, Marcelo ZanchettaMartins, Alessandro SantanaAzevedo Tosta, Thaína AparecidaNeves, Leandro Alves [UNESP]2018-12-11T17:20:40Z2018-12-11T17:20:40Z2018-09-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article65-77application/pdfhttp://dx.doi.org/10.1016/j.cmpb.2018.05.035Computer Methods and Programs in Biomedicine, v. 163, p. 65-77.1872-75650169-2607http://hdl.handle.net/11449/17640210.1016/j.cmpb.2018.05.0352-s2.0-850480757932-s2.0-85048075793.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengComputer Methods and Programs in Biomedicine0,786info:eu-repo/semantics/openAccess2023-11-07T06:14:24Zoai:repositorio.unesp.br:11449/176402Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T17:06:29.618022Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Lymphoma images analysis using morphological and non-morphological descriptors for classification
title Lymphoma images analysis using morphological and non-morphological descriptors for classification
spellingShingle Lymphoma images analysis using morphological and non-morphological descriptors for classification
do Nascimento, Marcelo Zanchetta
Histological image
Lymphoma
Morphological and non-morphological features
Polynomial
SVM
title_short Lymphoma images analysis using morphological and non-morphological descriptors for classification
title_full Lymphoma images analysis using morphological and non-morphological descriptors for classification
title_fullStr Lymphoma images analysis using morphological and non-morphological descriptors for classification
title_full_unstemmed Lymphoma images analysis using morphological and non-morphological descriptors for classification
title_sort Lymphoma images analysis using morphological and non-morphological descriptors for classification
author do Nascimento, Marcelo Zanchetta
author_facet do Nascimento, Marcelo Zanchetta
Martins, Alessandro Santana
Azevedo Tosta, Thaína Aparecida
Neves, Leandro Alves [UNESP]
author_role author
author2 Martins, Alessandro Santana
Azevedo Tosta, Thaína Aparecida
Neves, Leandro Alves [UNESP]
author2_role author
author
author
dc.contributor.none.fl_str_mv UFU - FACOM
IFTM
Universidade Federal do ABC (UFABC)
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv do Nascimento, Marcelo Zanchetta
Martins, Alessandro Santana
Azevedo Tosta, Thaína Aparecida
Neves, Leandro Alves [UNESP]
dc.subject.por.fl_str_mv Histological image
Lymphoma
Morphological and non-morphological features
Polynomial
SVM
topic Histological image
Lymphoma
Morphological and non-morphological features
Polynomial
SVM
description Mantle cell lymphoma, follicular lymphoma and chronic lymphocytic leukemia are the principle subtypes of the non-Hodgkin lymphomas. The diversity of clinical presentations and the histopathological features have made diagnosis of such lymphomas a complex task for specialists. Computer aided diagnosis systems employ computational vision and image processing techniques, which contribute toward the detection, diagnosis and prognosis of digitised images of histological samples. Studies aimed at improving the understanding of morphological and non-morphological features for classification of lymphoma remain a challenge in this area. This work presents a new approach for the classification of information extracted from morphological and non-morphological features of nuclei of lymphoma images. We extracted data of the RGB model of the image and employed contrast limited adaptive histogram equalisation and 2D order-statistics filter methods to enhance the contrast and remove noise. The regions of interest were identified by the global thresholding method. The flood-fill and watershed techniques were used to remove the small false positive regions. The area, extent, perimeter, convex area, solidity, eccentricity, equivalent diameter, minor axis and major axis measurements were computed for the regions detected in the nuclei. In the feature selection stage, we applied the ANOVA, Ansari-Bradley and Wilcoxon rank sum methods. Finally, we employed the polynomial, support vector machine, random forest and decision tree classifiers in order to evaluate the performance of the proposed approach. The non-morphological features achieved higher AUC and AC values for all cases: the obtained rates were between 95% and 100%. These results are relevant, especially when we consider the difficulties of clinical practice in distinguishing the studied groups. The proposed approach is useful as an automated protocol for the diagnosis of lymphoma histological tissue.
publishDate 2018
dc.date.none.fl_str_mv 2018-12-11T17:20:40Z
2018-12-11T17:20:40Z
2018-09-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.cmpb.2018.05.035
Computer Methods and Programs in Biomedicine, v. 163, p. 65-77.
1872-7565
0169-2607
http://hdl.handle.net/11449/176402
10.1016/j.cmpb.2018.05.035
2-s2.0-85048075793
2-s2.0-85048075793.pdf
url http://dx.doi.org/10.1016/j.cmpb.2018.05.035
http://hdl.handle.net/11449/176402
identifier_str_mv Computer Methods and Programs in Biomedicine, v. 163, p. 65-77.
1872-7565
0169-2607
10.1016/j.cmpb.2018.05.035
2-s2.0-85048075793
2-s2.0-85048075793.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Computer Methods and Programs in Biomedicine
0,786
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 65-77
application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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