Heterologous microsatellite primer pairs informative for the whole genus Arachis

Detalhes bibliográficos
Autor(a) principal: Hoshino, Andrea Akemi [UNESP]
Data de Publicação: 2006
Outros Autores: Bravo, Juliana Pereira [UNESP], Angelici, Carla M.L.C.D. [UNESP], Barbosa, Andréa V. Gobbi [UNESP], Lopes, Catalina Romero [UNESP], Gimenes, Marcos A. [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1590/S1415-47572006000400016
http://hdl.handle.net/11449/17948
Resumo: The genus Arachis currently comprises 69 described species, some of which have potential and real value as human and animal foods. These Arachis species have been collected and maintained in germplasm banks to provide material that can be used as sources of genes in breeding programs and for the selection of new cultivars. One of the principal objectives of germplasm conservation is the evaluation of genetic variability, which is best conducted using molecular markers. We investigated the use of heterologous primers to amplify microsatellite loci that could be used to evaluate genetic variability in Arachis germplasm. Fifteen microsatellite primer pairs were tested in 76 accessions of 34 species from the nine Arachis sections. The data indicated that heterologous primers were very useful in Arachis since they had high transferability among the species (91%) and allowed the amplification of very polymorphic putative loci, which allowed both the characterization of most accessions and to make inferences about the mating systems of some species analyzed. Our data also revealed that the germplasm analyzed showed high variability, even when represented by few accessions.
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spelling Heterologous microsatellite primer pairs informative for the whole genus Arachispeanutgenetic relationshipmolecular markerswild relativesThe genus Arachis currently comprises 69 described species, some of which have potential and real value as human and animal foods. These Arachis species have been collected and maintained in germplasm banks to provide material that can be used as sources of genes in breeding programs and for the selection of new cultivars. One of the principal objectives of germplasm conservation is the evaluation of genetic variability, which is best conducted using molecular markers. We investigated the use of heterologous primers to amplify microsatellite loci that could be used to evaluate genetic variability in Arachis germplasm. Fifteen microsatellite primer pairs were tested in 76 accessions of 34 species from the nine Arachis sections. The data indicated that heterologous primers were very useful in Arachis since they had high transferability among the species (91%) and allowed the amplification of very polymorphic putative loci, which allowed both the characterization of most accessions and to make inferences about the mating systems of some species analyzed. Our data also revealed that the germplasm analyzed showed high variability, even when represented by few accessions.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Universidade Estadual Paulista Instituto de Biociências Departamento de GenéticaInstituto Agronômico de Campinas Centro de Pesquisa e Desenvolvimento de Recursos Genéticos e VegetaisUniversidade Estadual Paulista Instituto de Biociências Departamento de GenéticaSociedade Brasileira de GenéticaUniversidade Estadual Paulista (Unesp)Instituto Agronômico (IAC)Hoshino, Andrea Akemi [UNESP]Bravo, Juliana Pereira [UNESP]Angelici, Carla M.L.C.D. [UNESP]Barbosa, Andréa V. Gobbi [UNESP]Lopes, Catalina Romero [UNESP]Gimenes, Marcos A. [UNESP]2014-05-20T13:50:16Z2014-05-20T13:50:16Z2006-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article665-675application/pdfhttp://dx.doi.org/10.1590/S1415-47572006000400016Genetics and Molecular Biology. Sociedade Brasileira de Genética, v. 29, n. 4, p. 665-675, 2006.1415-4757http://hdl.handle.net/11449/1794810.1590/S1415-47572006000400016S1415-47572006000400016S1415-47572006000400016.pdf6903215575686010SciELOreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengGenetics and Molecular Biology1.4930,638info:eu-repo/semantics/openAccess2023-10-18T06:05:54Zoai:repositorio.unesp.br:11449/17948Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T15:14:06.545998Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Heterologous microsatellite primer pairs informative for the whole genus Arachis
title Heterologous microsatellite primer pairs informative for the whole genus Arachis
spellingShingle Heterologous microsatellite primer pairs informative for the whole genus Arachis
Hoshino, Andrea Akemi [UNESP]
peanut
genetic relationship
molecular markers
wild relatives
title_short Heterologous microsatellite primer pairs informative for the whole genus Arachis
title_full Heterologous microsatellite primer pairs informative for the whole genus Arachis
title_fullStr Heterologous microsatellite primer pairs informative for the whole genus Arachis
title_full_unstemmed Heterologous microsatellite primer pairs informative for the whole genus Arachis
title_sort Heterologous microsatellite primer pairs informative for the whole genus Arachis
author Hoshino, Andrea Akemi [UNESP]
author_facet Hoshino, Andrea Akemi [UNESP]
Bravo, Juliana Pereira [UNESP]
Angelici, Carla M.L.C.D. [UNESP]
Barbosa, Andréa V. Gobbi [UNESP]
Lopes, Catalina Romero [UNESP]
Gimenes, Marcos A. [UNESP]
author_role author
author2 Bravo, Juliana Pereira [UNESP]
Angelici, Carla M.L.C.D. [UNESP]
Barbosa, Andréa V. Gobbi [UNESP]
Lopes, Catalina Romero [UNESP]
Gimenes, Marcos A. [UNESP]
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Instituto Agronômico (IAC)
dc.contributor.author.fl_str_mv Hoshino, Andrea Akemi [UNESP]
Bravo, Juliana Pereira [UNESP]
Angelici, Carla M.L.C.D. [UNESP]
Barbosa, Andréa V. Gobbi [UNESP]
Lopes, Catalina Romero [UNESP]
Gimenes, Marcos A. [UNESP]
dc.subject.por.fl_str_mv peanut
genetic relationship
molecular markers
wild relatives
topic peanut
genetic relationship
molecular markers
wild relatives
description The genus Arachis currently comprises 69 described species, some of which have potential and real value as human and animal foods. These Arachis species have been collected and maintained in germplasm banks to provide material that can be used as sources of genes in breeding programs and for the selection of new cultivars. One of the principal objectives of germplasm conservation is the evaluation of genetic variability, which is best conducted using molecular markers. We investigated the use of heterologous primers to amplify microsatellite loci that could be used to evaluate genetic variability in Arachis germplasm. Fifteen microsatellite primer pairs were tested in 76 accessions of 34 species from the nine Arachis sections. The data indicated that heterologous primers were very useful in Arachis since they had high transferability among the species (91%) and allowed the amplification of very polymorphic putative loci, which allowed both the characterization of most accessions and to make inferences about the mating systems of some species analyzed. Our data also revealed that the germplasm analyzed showed high variability, even when represented by few accessions.
publishDate 2006
dc.date.none.fl_str_mv 2006-01-01
2014-05-20T13:50:16Z
2014-05-20T13:50:16Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1590/S1415-47572006000400016
Genetics and Molecular Biology. Sociedade Brasileira de Genética, v. 29, n. 4, p. 665-675, 2006.
1415-4757
http://hdl.handle.net/11449/17948
10.1590/S1415-47572006000400016
S1415-47572006000400016
S1415-47572006000400016.pdf
6903215575686010
url http://dx.doi.org/10.1590/S1415-47572006000400016
http://hdl.handle.net/11449/17948
identifier_str_mv Genetics and Molecular Biology. Sociedade Brasileira de Genética, v. 29, n. 4, p. 665-675, 2006.
1415-4757
10.1590/S1415-47572006000400016
S1415-47572006000400016
S1415-47572006000400016.pdf
6903215575686010
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Genetics and Molecular Biology
1.493
0,638
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 665-675
application/pdf
dc.publisher.none.fl_str_mv Sociedade Brasileira de Genética
publisher.none.fl_str_mv Sociedade Brasileira de Genética
dc.source.none.fl_str_mv SciELO
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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