Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms

Detalhes bibliográficos
Autor(a) principal: Moraes Riboli, Danilo Flavio [UNESP]
Data de Publicação: 2014
Outros Autores: Lyra, João César [UNESP], Silva, Eliane Pessoa [UNESP], Valadao, Luisa Leite [UNESP], Bentlin, Maria Regina [UNESP], Corrente, José Eduardo [UNESP], Rugolo, Ligia Maria Suppo de Souza [UNESP], Cunha, Maria de Lourdes Ribeiro de Souza da [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1186/1471-2334-14-283
http://hdl.handle.net/11449/112645
Resumo: Background: Catheter-related bloodstream infections (CR-BSIs) have become the most common cause of healthcare-associated bloodstream infections in neonatal intensive care units (ICUs). Microbiological evidence implicating catheters as the source of bloodstream infection is necessary to establish the diagnosis of CR-BSIs. Semi-quantitative culture is used to determine the presence of microorganisms on the external catheter surface, whereas quantitative culture also isolates microorganisms present inside the catheter. The main objective of this study was to determine the sensitivity and specificity of these two techniques for the diagnosis of CR-BSIs in newborns from a neonatal ICU. In addition, PFGE was used for similarity analysis of the microorganisms isolated from catheters and blood cultures.Methods: Semi-quantitative and quantitative methods were used for the culture of catheter tips obtained from newborns. Strains isolated from catheter tips and blood cultures which exhibited the same antimicrobial susceptibility profile were included in the study as positive cases of CR-BSI. PFGE of the microorganisms isolated from catheters and blood cultures was performed for similarity analysis and detection of clones in the ICU.Results: A total of 584 catheter tips from 399 patients seen between November 2005 and June 2012 were analyzed. Twenty-nine cases of CR-BSI were confirmed. Coagulase-negative staphylococci (CoNS) were the most frequently isolated microorganisms, including S. epidermidis as the most prevalent species (65.5%), followed by S. haemolyticus (10.3%), yeasts (10.3%), K. pneumoniae (6.9%), S. aureus (3.4%), and E. coli (3.4%). The sensitivity of the semi-quantitative and quantitative techniques was 72.7% and 59.3%, respectively, and specificity was 95.7% and 94.4%. The diagnosis of CR-BSIs based on PFGE analysis of similarity between strains isolated from catheter tips and blood cultures showed 82.6% sensitivity and 100% specificity.Conclusion: The semi-quantitative culture method showed higher sensitivity and specificity for the diagnosis of CR-BSIs in newborns when compared to the quantitative technique. In addition, this method is easier to perform and shows better agreement with the gold standard, and should therefore be recommended for routine clinical laboratory use. PFGE may contribute to the control of CR-BSIs by identifying clusters of microorganisms in neonatal ICUs, providing a means of determining potential cross-infection between patients.
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spelling Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganismsSemiquantitative cultureQuantitative cultureCatheter-related bloodstream infectionsSensitivity and specificityBackground: Catheter-related bloodstream infections (CR-BSIs) have become the most common cause of healthcare-associated bloodstream infections in neonatal intensive care units (ICUs). Microbiological evidence implicating catheters as the source of bloodstream infection is necessary to establish the diagnosis of CR-BSIs. Semi-quantitative culture is used to determine the presence of microorganisms on the external catheter surface, whereas quantitative culture also isolates microorganisms present inside the catheter. The main objective of this study was to determine the sensitivity and specificity of these two techniques for the diagnosis of CR-BSIs in newborns from a neonatal ICU. In addition, PFGE was used for similarity analysis of the microorganisms isolated from catheters and blood cultures.Methods: Semi-quantitative and quantitative methods were used for the culture of catheter tips obtained from newborns. Strains isolated from catheter tips and blood cultures which exhibited the same antimicrobial susceptibility profile were included in the study as positive cases of CR-BSI. PFGE of the microorganisms isolated from catheters and blood cultures was performed for similarity analysis and detection of clones in the ICU.Results: A total of 584 catheter tips from 399 patients seen between November 2005 and June 2012 were analyzed. Twenty-nine cases of CR-BSI were confirmed. Coagulase-negative staphylococci (CoNS) were the most frequently isolated microorganisms, including S. epidermidis as the most prevalent species (65.5%), followed by S. haemolyticus (10.3%), yeasts (10.3%), K. pneumoniae (6.9%), S. aureus (3.4%), and E. coli (3.4%). The sensitivity of the semi-quantitative and quantitative techniques was 72.7% and 59.3%, respectively, and specificity was 95.7% and 94.4%. The diagnosis of CR-BSIs based on PFGE analysis of similarity between strains isolated from catheter tips and blood cultures showed 82.6% sensitivity and 100% specificity.Conclusion: The semi-quantitative culture method showed higher sensitivity and specificity for the diagnosis of CR-BSIs in newborns when compared to the quantitative technique. In addition, this method is easier to perform and shows better agreement with the gold standard, and should therefore be recommended for routine clinical laboratory use. PFGE may contribute to the control of CR-BSIs by identifying clusters of microorganisms in neonatal ICUs, providing a means of determining potential cross-infection between patients.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Univ Estadual Paulista, UNESP, Inst Biociencias, Dept Microbiol & Imunol, Botucatu, SP, BrazilUniv Estadual Paulista, UNESP, Fac Med, Dept Pediat, Botucatu, SP, BrazilUniv Estadual Paulista, UNESP, Inst Biociencias, Dept Bioestat, Botucatu, SP, BrazilUniv Estadual Paulista, UNESP, Inst Biociencias, Dept Microbiol & Imunol, Botucatu, SP, BrazilUniv Estadual Paulista, UNESP, Fac Med, Dept Pediat, Botucatu, SP, BrazilUniv Estadual Paulista, UNESP, Inst Biociencias, Dept Bioestat, Botucatu, SP, BrazilFAPESP: 10/14581-7FAPESP: 14/07631-9Biomed Central Ltd.Universidade Estadual Paulista (Unesp)Moraes Riboli, Danilo Flavio [UNESP]Lyra, João César [UNESP]Silva, Eliane Pessoa [UNESP]Valadao, Luisa Leite [UNESP]Bentlin, Maria Regina [UNESP]Corrente, José Eduardo [UNESP]Rugolo, Ligia Maria Suppo de Souza [UNESP]Cunha, Maria de Lourdes Ribeiro de Souza da [UNESP]2014-12-03T13:10:55Z2014-12-03T13:10:55Z2014-05-22info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article9application/pdfhttp://dx.doi.org/10.1186/1471-2334-14-283Bmc Infectious Diseases. London: Biomed Central Ltd, v. 14, 9 p., 2014.1471-2334http://hdl.handle.net/11449/11264510.1186/1471-2334-14-283WOS:000336996000001WOS000336996000001.pdf2559637400719543119775553110817701156477723159730000-0001-5478-4996Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBMC Infectious Diseases2.6201,576info:eu-repo/semantics/openAccess2023-12-12T06:20:42Zoai:repositorio.unesp.br:11449/112645Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-12-12T06:20:42Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms
title Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms
spellingShingle Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms
Moraes Riboli, Danilo Flavio [UNESP]
Semiquantitative culture
Quantitative culture
Catheter-related bloodstream infections
Sensitivity and specificity
title_short Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms
title_full Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms
title_fullStr Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms
title_full_unstemmed Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms
title_sort Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms
author Moraes Riboli, Danilo Flavio [UNESP]
author_facet Moraes Riboli, Danilo Flavio [UNESP]
Lyra, João César [UNESP]
Silva, Eliane Pessoa [UNESP]
Valadao, Luisa Leite [UNESP]
Bentlin, Maria Regina [UNESP]
Corrente, José Eduardo [UNESP]
Rugolo, Ligia Maria Suppo de Souza [UNESP]
Cunha, Maria de Lourdes Ribeiro de Souza da [UNESP]
author_role author
author2 Lyra, João César [UNESP]
Silva, Eliane Pessoa [UNESP]
Valadao, Luisa Leite [UNESP]
Bentlin, Maria Regina [UNESP]
Corrente, José Eduardo [UNESP]
Rugolo, Ligia Maria Suppo de Souza [UNESP]
Cunha, Maria de Lourdes Ribeiro de Souza da [UNESP]
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Moraes Riboli, Danilo Flavio [UNESP]
Lyra, João César [UNESP]
Silva, Eliane Pessoa [UNESP]
Valadao, Luisa Leite [UNESP]
Bentlin, Maria Regina [UNESP]
Corrente, José Eduardo [UNESP]
Rugolo, Ligia Maria Suppo de Souza [UNESP]
Cunha, Maria de Lourdes Ribeiro de Souza da [UNESP]
dc.subject.por.fl_str_mv Semiquantitative culture
Quantitative culture
Catheter-related bloodstream infections
Sensitivity and specificity
topic Semiquantitative culture
Quantitative culture
Catheter-related bloodstream infections
Sensitivity and specificity
description Background: Catheter-related bloodstream infections (CR-BSIs) have become the most common cause of healthcare-associated bloodstream infections in neonatal intensive care units (ICUs). Microbiological evidence implicating catheters as the source of bloodstream infection is necessary to establish the diagnosis of CR-BSIs. Semi-quantitative culture is used to determine the presence of microorganisms on the external catheter surface, whereas quantitative culture also isolates microorganisms present inside the catheter. The main objective of this study was to determine the sensitivity and specificity of these two techniques for the diagnosis of CR-BSIs in newborns from a neonatal ICU. In addition, PFGE was used for similarity analysis of the microorganisms isolated from catheters and blood cultures.Methods: Semi-quantitative and quantitative methods were used for the culture of catheter tips obtained from newborns. Strains isolated from catheter tips and blood cultures which exhibited the same antimicrobial susceptibility profile were included in the study as positive cases of CR-BSI. PFGE of the microorganisms isolated from catheters and blood cultures was performed for similarity analysis and detection of clones in the ICU.Results: A total of 584 catheter tips from 399 patients seen between November 2005 and June 2012 were analyzed. Twenty-nine cases of CR-BSI were confirmed. Coagulase-negative staphylococci (CoNS) were the most frequently isolated microorganisms, including S. epidermidis as the most prevalent species (65.5%), followed by S. haemolyticus (10.3%), yeasts (10.3%), K. pneumoniae (6.9%), S. aureus (3.4%), and E. coli (3.4%). The sensitivity of the semi-quantitative and quantitative techniques was 72.7% and 59.3%, respectively, and specificity was 95.7% and 94.4%. The diagnosis of CR-BSIs based on PFGE analysis of similarity between strains isolated from catheter tips and blood cultures showed 82.6% sensitivity and 100% specificity.Conclusion: The semi-quantitative culture method showed higher sensitivity and specificity for the diagnosis of CR-BSIs in newborns when compared to the quantitative technique. In addition, this method is easier to perform and shows better agreement with the gold standard, and should therefore be recommended for routine clinical laboratory use. PFGE may contribute to the control of CR-BSIs by identifying clusters of microorganisms in neonatal ICUs, providing a means of determining potential cross-infection between patients.
publishDate 2014
dc.date.none.fl_str_mv 2014-12-03T13:10:55Z
2014-12-03T13:10:55Z
2014-05-22
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1186/1471-2334-14-283
Bmc Infectious Diseases. London: Biomed Central Ltd, v. 14, 9 p., 2014.
1471-2334
http://hdl.handle.net/11449/112645
10.1186/1471-2334-14-283
WOS:000336996000001
WOS000336996000001.pdf
2559637400719543
1197755531108177
0115647772315973
0000-0001-5478-4996
url http://dx.doi.org/10.1186/1471-2334-14-283
http://hdl.handle.net/11449/112645
identifier_str_mv Bmc Infectious Diseases. London: Biomed Central Ltd, v. 14, 9 p., 2014.
1471-2334
10.1186/1471-2334-14-283
WOS:000336996000001
WOS000336996000001.pdf
2559637400719543
1197755531108177
0115647772315973
0000-0001-5478-4996
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv BMC Infectious Diseases
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application/pdf
dc.publisher.none.fl_str_mv Biomed Central Ltd.
publisher.none.fl_str_mv Biomed Central Ltd.
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
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instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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