Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms
Autor(a) principal: | |
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Data de Publicação: | 2014 |
Outros Autores: | , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1186/1471-2334-14-283 http://hdl.handle.net/11449/112645 |
Resumo: | Background: Catheter-related bloodstream infections (CR-BSIs) have become the most common cause of healthcare-associated bloodstream infections in neonatal intensive care units (ICUs). Microbiological evidence implicating catheters as the source of bloodstream infection is necessary to establish the diagnosis of CR-BSIs. Semi-quantitative culture is used to determine the presence of microorganisms on the external catheter surface, whereas quantitative culture also isolates microorganisms present inside the catheter. The main objective of this study was to determine the sensitivity and specificity of these two techniques for the diagnosis of CR-BSIs in newborns from a neonatal ICU. In addition, PFGE was used for similarity analysis of the microorganisms isolated from catheters and blood cultures.Methods: Semi-quantitative and quantitative methods were used for the culture of catheter tips obtained from newborns. Strains isolated from catheter tips and blood cultures which exhibited the same antimicrobial susceptibility profile were included in the study as positive cases of CR-BSI. PFGE of the microorganisms isolated from catheters and blood cultures was performed for similarity analysis and detection of clones in the ICU.Results: A total of 584 catheter tips from 399 patients seen between November 2005 and June 2012 were analyzed. Twenty-nine cases of CR-BSI were confirmed. Coagulase-negative staphylococci (CoNS) were the most frequently isolated microorganisms, including S. epidermidis as the most prevalent species (65.5%), followed by S. haemolyticus (10.3%), yeasts (10.3%), K. pneumoniae (6.9%), S. aureus (3.4%), and E. coli (3.4%). The sensitivity of the semi-quantitative and quantitative techniques was 72.7% and 59.3%, respectively, and specificity was 95.7% and 94.4%. The diagnosis of CR-BSIs based on PFGE analysis of similarity between strains isolated from catheter tips and blood cultures showed 82.6% sensitivity and 100% specificity.Conclusion: The semi-quantitative culture method showed higher sensitivity and specificity for the diagnosis of CR-BSIs in newborns when compared to the quantitative technique. In addition, this method is easier to perform and shows better agreement with the gold standard, and should therefore be recommended for routine clinical laboratory use. PFGE may contribute to the control of CR-BSIs by identifying clusters of microorganisms in neonatal ICUs, providing a means of determining potential cross-infection between patients. |
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Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganismsSemiquantitative cultureQuantitative cultureCatheter-related bloodstream infectionsSensitivity and specificityBackground: Catheter-related bloodstream infections (CR-BSIs) have become the most common cause of healthcare-associated bloodstream infections in neonatal intensive care units (ICUs). Microbiological evidence implicating catheters as the source of bloodstream infection is necessary to establish the diagnosis of CR-BSIs. Semi-quantitative culture is used to determine the presence of microorganisms on the external catheter surface, whereas quantitative culture also isolates microorganisms present inside the catheter. The main objective of this study was to determine the sensitivity and specificity of these two techniques for the diagnosis of CR-BSIs in newborns from a neonatal ICU. In addition, PFGE was used for similarity analysis of the microorganisms isolated from catheters and blood cultures.Methods: Semi-quantitative and quantitative methods were used for the culture of catheter tips obtained from newborns. Strains isolated from catheter tips and blood cultures which exhibited the same antimicrobial susceptibility profile were included in the study as positive cases of CR-BSI. PFGE of the microorganisms isolated from catheters and blood cultures was performed for similarity analysis and detection of clones in the ICU.Results: A total of 584 catheter tips from 399 patients seen between November 2005 and June 2012 were analyzed. Twenty-nine cases of CR-BSI were confirmed. Coagulase-negative staphylococci (CoNS) were the most frequently isolated microorganisms, including S. epidermidis as the most prevalent species (65.5%), followed by S. haemolyticus (10.3%), yeasts (10.3%), K. pneumoniae (6.9%), S. aureus (3.4%), and E. coli (3.4%). The sensitivity of the semi-quantitative and quantitative techniques was 72.7% and 59.3%, respectively, and specificity was 95.7% and 94.4%. The diagnosis of CR-BSIs based on PFGE analysis of similarity between strains isolated from catheter tips and blood cultures showed 82.6% sensitivity and 100% specificity.Conclusion: The semi-quantitative culture method showed higher sensitivity and specificity for the diagnosis of CR-BSIs in newborns when compared to the quantitative technique. In addition, this method is easier to perform and shows better agreement with the gold standard, and should therefore be recommended for routine clinical laboratory use. PFGE may contribute to the control of CR-BSIs by identifying clusters of microorganisms in neonatal ICUs, providing a means of determining potential cross-infection between patients.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Univ Estadual Paulista, UNESP, Inst Biociencias, Dept Microbiol & Imunol, Botucatu, SP, BrazilUniv Estadual Paulista, UNESP, Fac Med, Dept Pediat, Botucatu, SP, BrazilUniv Estadual Paulista, UNESP, Inst Biociencias, Dept Bioestat, Botucatu, SP, BrazilUniv Estadual Paulista, UNESP, Inst Biociencias, Dept Microbiol & Imunol, Botucatu, SP, BrazilUniv Estadual Paulista, UNESP, Fac Med, Dept Pediat, Botucatu, SP, BrazilUniv Estadual Paulista, UNESP, Inst Biociencias, Dept Bioestat, Botucatu, SP, BrazilFAPESP: 10/14581-7FAPESP: 14/07631-9Biomed Central Ltd.Universidade Estadual Paulista (Unesp)Moraes Riboli, Danilo Flavio [UNESP]Lyra, João César [UNESP]Silva, Eliane Pessoa [UNESP]Valadao, Luisa Leite [UNESP]Bentlin, Maria Regina [UNESP]Corrente, José Eduardo [UNESP]Rugolo, Ligia Maria Suppo de Souza [UNESP]Cunha, Maria de Lourdes Ribeiro de Souza da [UNESP]2014-12-03T13:10:55Z2014-12-03T13:10:55Z2014-05-22info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article9application/pdfhttp://dx.doi.org/10.1186/1471-2334-14-283Bmc Infectious Diseases. London: Biomed Central Ltd, v. 14, 9 p., 2014.1471-2334http://hdl.handle.net/11449/11264510.1186/1471-2334-14-283WOS:000336996000001WOS000336996000001.pdf2559637400719543119775553110817701156477723159730000-0001-5478-4996Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBMC Infectious Diseases2.6201,576info:eu-repo/semantics/openAccess2024-09-03T13:46:51Zoai:repositorio.unesp.br:11449/112645Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-09-03T13:46:51Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms |
title |
Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms |
spellingShingle |
Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms Moraes Riboli, Danilo Flavio [UNESP] Semiquantitative culture Quantitative culture Catheter-related bloodstream infections Sensitivity and specificity |
title_short |
Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms |
title_full |
Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms |
title_fullStr |
Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms |
title_full_unstemmed |
Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms |
title_sort |
Diagnostic accuracy of semi-quantitative and quantitative culture techniques for the diagnosis of catheter-related infections in newborns and molecular typing of isolated microorganisms |
author |
Moraes Riboli, Danilo Flavio [UNESP] |
author_facet |
Moraes Riboli, Danilo Flavio [UNESP] Lyra, João César [UNESP] Silva, Eliane Pessoa [UNESP] Valadao, Luisa Leite [UNESP] Bentlin, Maria Regina [UNESP] Corrente, José Eduardo [UNESP] Rugolo, Ligia Maria Suppo de Souza [UNESP] Cunha, Maria de Lourdes Ribeiro de Souza da [UNESP] |
author_role |
author |
author2 |
Lyra, João César [UNESP] Silva, Eliane Pessoa [UNESP] Valadao, Luisa Leite [UNESP] Bentlin, Maria Regina [UNESP] Corrente, José Eduardo [UNESP] Rugolo, Ligia Maria Suppo de Souza [UNESP] Cunha, Maria de Lourdes Ribeiro de Souza da [UNESP] |
author2_role |
author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) |
dc.contributor.author.fl_str_mv |
Moraes Riboli, Danilo Flavio [UNESP] Lyra, João César [UNESP] Silva, Eliane Pessoa [UNESP] Valadao, Luisa Leite [UNESP] Bentlin, Maria Regina [UNESP] Corrente, José Eduardo [UNESP] Rugolo, Ligia Maria Suppo de Souza [UNESP] Cunha, Maria de Lourdes Ribeiro de Souza da [UNESP] |
dc.subject.por.fl_str_mv |
Semiquantitative culture Quantitative culture Catheter-related bloodstream infections Sensitivity and specificity |
topic |
Semiquantitative culture Quantitative culture Catheter-related bloodstream infections Sensitivity and specificity |
description |
Background: Catheter-related bloodstream infections (CR-BSIs) have become the most common cause of healthcare-associated bloodstream infections in neonatal intensive care units (ICUs). Microbiological evidence implicating catheters as the source of bloodstream infection is necessary to establish the diagnosis of CR-BSIs. Semi-quantitative culture is used to determine the presence of microorganisms on the external catheter surface, whereas quantitative culture also isolates microorganisms present inside the catheter. The main objective of this study was to determine the sensitivity and specificity of these two techniques for the diagnosis of CR-BSIs in newborns from a neonatal ICU. In addition, PFGE was used for similarity analysis of the microorganisms isolated from catheters and blood cultures.Methods: Semi-quantitative and quantitative methods were used for the culture of catheter tips obtained from newborns. Strains isolated from catheter tips and blood cultures which exhibited the same antimicrobial susceptibility profile were included in the study as positive cases of CR-BSI. PFGE of the microorganisms isolated from catheters and blood cultures was performed for similarity analysis and detection of clones in the ICU.Results: A total of 584 catheter tips from 399 patients seen between November 2005 and June 2012 were analyzed. Twenty-nine cases of CR-BSI were confirmed. Coagulase-negative staphylococci (CoNS) were the most frequently isolated microorganisms, including S. epidermidis as the most prevalent species (65.5%), followed by S. haemolyticus (10.3%), yeasts (10.3%), K. pneumoniae (6.9%), S. aureus (3.4%), and E. coli (3.4%). The sensitivity of the semi-quantitative and quantitative techniques was 72.7% and 59.3%, respectively, and specificity was 95.7% and 94.4%. The diagnosis of CR-BSIs based on PFGE analysis of similarity between strains isolated from catheter tips and blood cultures showed 82.6% sensitivity and 100% specificity.Conclusion: The semi-quantitative culture method showed higher sensitivity and specificity for the diagnosis of CR-BSIs in newborns when compared to the quantitative technique. In addition, this method is easier to perform and shows better agreement with the gold standard, and should therefore be recommended for routine clinical laboratory use. PFGE may contribute to the control of CR-BSIs by identifying clusters of microorganisms in neonatal ICUs, providing a means of determining potential cross-infection between patients. |
publishDate |
2014 |
dc.date.none.fl_str_mv |
2014-12-03T13:10:55Z 2014-12-03T13:10:55Z 2014-05-22 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1186/1471-2334-14-283 Bmc Infectious Diseases. London: Biomed Central Ltd, v. 14, 9 p., 2014. 1471-2334 http://hdl.handle.net/11449/112645 10.1186/1471-2334-14-283 WOS:000336996000001 WOS000336996000001.pdf 2559637400719543 1197755531108177 0115647772315973 0000-0001-5478-4996 |
url |
http://dx.doi.org/10.1186/1471-2334-14-283 http://hdl.handle.net/11449/112645 |
identifier_str_mv |
Bmc Infectious Diseases. London: Biomed Central Ltd, v. 14, 9 p., 2014. 1471-2334 10.1186/1471-2334-14-283 WOS:000336996000001 WOS000336996000001.pdf 2559637400719543 1197755531108177 0115647772315973 0000-0001-5478-4996 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
BMC Infectious Diseases 2.620 1,576 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
9 application/pdf |
dc.publisher.none.fl_str_mv |
Biomed Central Ltd. |
publisher.none.fl_str_mv |
Biomed Central Ltd. |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
_version_ |
1810021399702536192 |