Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel
Autor(a) principal: | |
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Data de Publicação: | 2021 |
Outros Autores: | , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1371/journal.pntd.0009714 http://hdl.handle.net/11449/233507 |
Resumo: | Background Pulmonary sequelae (PS) in patients with chronic paracoccidioidomycosis (PCM) typically include pulmonary fibrosis and emphysema. Knowledge of the molecular pathways involved in PS of PCM is required for treatment and biomarker identification. Methodology/Principal findings This non-concurrent cohort study included 29 patients with pulmonary PCM that were followed before and after treatment. From this group, 17 patients evolved to mild/ moderate PS and 12 evolved severe PS. Sera from patients were evaluated before treatment and at clinical cure, serological cure, and apparent cure. A nanoACQUITY UPLC-Xevo QT MS system and PLGS software were used to identify serum differentially expressed proteins, data are available via ProteomeXchange with identifier PXD026906. Serum differentially expressed proteins were then categorized using Cytoscape software and the Reactome pathway database. Seventy-two differentially expressed serum proteins were identified in patients with severe PS compared with patients with mild/moderate PS. Most proteins altered in severe PS were involved in wound healing, inflammatory response, and oxygen transport pathways. Before treatment and at clinical cure, signaling proteins participating in wound healing, complement cascade, cholesterol transport and retinoid metabolism pathways were downregulated in patients with severe PS, whereas signaling proteins in gluconeogenesis and gas exchange pathways were upregulated. At serological cure, the pattern of protein expression reversed. At apparent cure pathways related with tissue repair (fibrosis) became downregulated, and pathway related oxygen transport became upregulated. Additionally, we identified 11 proteins as candidate biomarkers for severe PS. Conclusions/Significance Development of severe PS is related to increased expression of proteins involved in glycolytic pathway and oxygen exchange), indicative of the greater cellular activity and replication associated with early dysregulation of wound healing and aberrant tissue repair. Our findings provide new targets to study mechanisms of PS in PCM, as well as potential biomarkers. |
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Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequelBackground Pulmonary sequelae (PS) in patients with chronic paracoccidioidomycosis (PCM) typically include pulmonary fibrosis and emphysema. Knowledge of the molecular pathways involved in PS of PCM is required for treatment and biomarker identification. Methodology/Principal findings This non-concurrent cohort study included 29 patients with pulmonary PCM that were followed before and after treatment. From this group, 17 patients evolved to mild/ moderate PS and 12 evolved severe PS. Sera from patients were evaluated before treatment and at clinical cure, serological cure, and apparent cure. A nanoACQUITY UPLC-Xevo QT MS system and PLGS software were used to identify serum differentially expressed proteins, data are available via ProteomeXchange with identifier PXD026906. Serum differentially expressed proteins were then categorized using Cytoscape software and the Reactome pathway database. Seventy-two differentially expressed serum proteins were identified in patients with severe PS compared with patients with mild/moderate PS. Most proteins altered in severe PS were involved in wound healing, inflammatory response, and oxygen transport pathways. Before treatment and at clinical cure, signaling proteins participating in wound healing, complement cascade, cholesterol transport and retinoid metabolism pathways were downregulated in patients with severe PS, whereas signaling proteins in gluconeogenesis and gas exchange pathways were upregulated. At serological cure, the pattern of protein expression reversed. At apparent cure pathways related with tissue repair (fibrosis) became downregulated, and pathway related oxygen transport became upregulated. Additionally, we identified 11 proteins as candidate biomarkers for severe PS. Conclusions/Significance Development of severe PS is related to increased expression of proteins involved in glycolytic pathway and oxygen exchange), indicative of the greater cellular activity and replication associated with early dysregulation of wound healing and aberrant tissue repair. Our findings provide new targets to study mechanisms of PS in PCM, as well as potential biomarkers.Faculdade de Medicina Universidade Federal de Mato Grosso do Sul (UFMS)Faculdade de Medicina Universidade Estadual Paulista (UNESP)Faculdade de Odontologia de Bauru (FOB) Universidade de São Paulo (USP)Faculdade de Medicina Universidade Estadual Paulista (UNESP)Universidade Federal de Mato Grosso do Sul (UFMS)Universidade Estadual Paulista (UNESP)Universidade de São Paulo (USP)Dos Santos, Amanda Ribeiro [UNESP]Dionizio, AlineDa Silva Fernandes, MileniRabelo Buzalaf, Marılia AfonsoPereira, Beatriz [UNESP]De Fatima Almeida Donanzam, Debora [UNESP]Marrone Ribeiro, Sergio [UNESP]Miranda Paniago, Anamaria MelloDe Souza Cavalcante, Ricardo [UNESP]Mendes, Rinaldo Poncio [UNESP]Venturini, James [UNESP]2022-05-01T09:00:51Z2022-05-01T09:00:51Z2021-08-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1371/journal.pntd.0009714PLoS Neglected Tropical Diseases, v. 15, n. 8, 2021.1935-27351935-2727http://hdl.handle.net/11449/23350710.1371/journal.pntd.00097142-s2.0-85114418020Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPLoS Neglected Tropical Diseasesinfo:eu-repo/semantics/openAccess2024-08-15T15:23:14Zoai:repositorio.unesp.br:11449/233507Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-15T15:23:14Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel |
title |
Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel |
spellingShingle |
Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel Dos Santos, Amanda Ribeiro [UNESP] |
title_short |
Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel |
title_full |
Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel |
title_fullStr |
Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel |
title_full_unstemmed |
Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel |
title_sort |
Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel |
author |
Dos Santos, Amanda Ribeiro [UNESP] |
author_facet |
Dos Santos, Amanda Ribeiro [UNESP] Dionizio, Aline Da Silva Fernandes, Mileni Rabelo Buzalaf, Marılia Afonso Pereira, Beatriz [UNESP] De Fatima Almeida Donanzam, Debora [UNESP] Marrone Ribeiro, Sergio [UNESP] Miranda Paniago, Anamaria Mello De Souza Cavalcante, Ricardo [UNESP] Mendes, Rinaldo Poncio [UNESP] Venturini, James [UNESP] |
author_role |
author |
author2 |
Dionizio, Aline Da Silva Fernandes, Mileni Rabelo Buzalaf, Marılia Afonso Pereira, Beatriz [UNESP] De Fatima Almeida Donanzam, Debora [UNESP] Marrone Ribeiro, Sergio [UNESP] Miranda Paniago, Anamaria Mello De Souza Cavalcante, Ricardo [UNESP] Mendes, Rinaldo Poncio [UNESP] Venturini, James [UNESP] |
author2_role |
author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Federal de Mato Grosso do Sul (UFMS) Universidade Estadual Paulista (UNESP) Universidade de São Paulo (USP) |
dc.contributor.author.fl_str_mv |
Dos Santos, Amanda Ribeiro [UNESP] Dionizio, Aline Da Silva Fernandes, Mileni Rabelo Buzalaf, Marılia Afonso Pereira, Beatriz [UNESP] De Fatima Almeida Donanzam, Debora [UNESP] Marrone Ribeiro, Sergio [UNESP] Miranda Paniago, Anamaria Mello De Souza Cavalcante, Ricardo [UNESP] Mendes, Rinaldo Poncio [UNESP] Venturini, James [UNESP] |
description |
Background Pulmonary sequelae (PS) in patients with chronic paracoccidioidomycosis (PCM) typically include pulmonary fibrosis and emphysema. Knowledge of the molecular pathways involved in PS of PCM is required for treatment and biomarker identification. Methodology/Principal findings This non-concurrent cohort study included 29 patients with pulmonary PCM that were followed before and after treatment. From this group, 17 patients evolved to mild/ moderate PS and 12 evolved severe PS. Sera from patients were evaluated before treatment and at clinical cure, serological cure, and apparent cure. A nanoACQUITY UPLC-Xevo QT MS system and PLGS software were used to identify serum differentially expressed proteins, data are available via ProteomeXchange with identifier PXD026906. Serum differentially expressed proteins were then categorized using Cytoscape software and the Reactome pathway database. Seventy-two differentially expressed serum proteins were identified in patients with severe PS compared with patients with mild/moderate PS. Most proteins altered in severe PS were involved in wound healing, inflammatory response, and oxygen transport pathways. Before treatment and at clinical cure, signaling proteins participating in wound healing, complement cascade, cholesterol transport and retinoid metabolism pathways were downregulated in patients with severe PS, whereas signaling proteins in gluconeogenesis and gas exchange pathways were upregulated. At serological cure, the pattern of protein expression reversed. At apparent cure pathways related with tissue repair (fibrosis) became downregulated, and pathway related oxygen transport became upregulated. Additionally, we identified 11 proteins as candidate biomarkers for severe PS. Conclusions/Significance Development of severe PS is related to increased expression of proteins involved in glycolytic pathway and oxygen exchange), indicative of the greater cellular activity and replication associated with early dysregulation of wound healing and aberrant tissue repair. Our findings provide new targets to study mechanisms of PS in PCM, as well as potential biomarkers. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-08-01 2022-05-01T09:00:51Z 2022-05-01T09:00:51Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1371/journal.pntd.0009714 PLoS Neglected Tropical Diseases, v. 15, n. 8, 2021. 1935-2735 1935-2727 http://hdl.handle.net/11449/233507 10.1371/journal.pntd.0009714 2-s2.0-85114418020 |
url |
http://dx.doi.org/10.1371/journal.pntd.0009714 http://hdl.handle.net/11449/233507 |
identifier_str_mv |
PLoS Neglected Tropical Diseases, v. 15, n. 8, 2021. 1935-2735 1935-2727 10.1371/journal.pntd.0009714 2-s2.0-85114418020 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
PLoS Neglected Tropical Diseases |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
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1808128181878652928 |