Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel

Detalhes bibliográficos
Autor(a) principal: Dos Santos, Amanda Ribeiro [UNESP]
Data de Publicação: 2021
Outros Autores: Dionizio, Aline, Da Silva Fernandes, Mileni, Rabelo Buzalaf, Marılia Afonso, Pereira, Beatriz [UNESP], De Fatima Almeida Donanzam, Debora [UNESP], Marrone Ribeiro, Sergio [UNESP], Miranda Paniago, Anamaria Mello, De Souza Cavalcante, Ricardo [UNESP], Mendes, Rinaldo Poncio [UNESP], Venturini, James [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1371/journal.pntd.0009714
http://hdl.handle.net/11449/233507
Resumo: Background Pulmonary sequelae (PS) in patients with chronic paracoccidioidomycosis (PCM) typically include pulmonary fibrosis and emphysema. Knowledge of the molecular pathways involved in PS of PCM is required for treatment and biomarker identification. Methodology/Principal findings This non-concurrent cohort study included 29 patients with pulmonary PCM that were followed before and after treatment. From this group, 17 patients evolved to mild/ moderate PS and 12 evolved severe PS. Sera from patients were evaluated before treatment and at clinical cure, serological cure, and apparent cure. A nanoACQUITY UPLC-Xevo QT MS system and PLGS software were used to identify serum differentially expressed proteins, data are available via ProteomeXchange with identifier PXD026906. Serum differentially expressed proteins were then categorized using Cytoscape software and the Reactome pathway database. Seventy-two differentially expressed serum proteins were identified in patients with severe PS compared with patients with mild/moderate PS. Most proteins altered in severe PS were involved in wound healing, inflammatory response, and oxygen transport pathways. Before treatment and at clinical cure, signaling proteins participating in wound healing, complement cascade, cholesterol transport and retinoid metabolism pathways were downregulated in patients with severe PS, whereas signaling proteins in gluconeogenesis and gas exchange pathways were upregulated. At serological cure, the pattern of protein expression reversed. At apparent cure pathways related with tissue repair (fibrosis) became downregulated, and pathway related oxygen transport became upregulated. Additionally, we identified 11 proteins as candidate biomarkers for severe PS. Conclusions/Significance Development of severe PS is related to increased expression of proteins involved in glycolytic pathway and oxygen exchange), indicative of the greater cellular activity and replication associated with early dysregulation of wound healing and aberrant tissue repair. Our findings provide new targets to study mechanisms of PS in PCM, as well as potential biomarkers.
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spelling Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequelBackground Pulmonary sequelae (PS) in patients with chronic paracoccidioidomycosis (PCM) typically include pulmonary fibrosis and emphysema. Knowledge of the molecular pathways involved in PS of PCM is required for treatment and biomarker identification. Methodology/Principal findings This non-concurrent cohort study included 29 patients with pulmonary PCM that were followed before and after treatment. From this group, 17 patients evolved to mild/ moderate PS and 12 evolved severe PS. Sera from patients were evaluated before treatment and at clinical cure, serological cure, and apparent cure. A nanoACQUITY UPLC-Xevo QT MS system and PLGS software were used to identify serum differentially expressed proteins, data are available via ProteomeXchange with identifier PXD026906. Serum differentially expressed proteins were then categorized using Cytoscape software and the Reactome pathway database. Seventy-two differentially expressed serum proteins were identified in patients with severe PS compared with patients with mild/moderate PS. Most proteins altered in severe PS were involved in wound healing, inflammatory response, and oxygen transport pathways. Before treatment and at clinical cure, signaling proteins participating in wound healing, complement cascade, cholesterol transport and retinoid metabolism pathways were downregulated in patients with severe PS, whereas signaling proteins in gluconeogenesis and gas exchange pathways were upregulated. At serological cure, the pattern of protein expression reversed. At apparent cure pathways related with tissue repair (fibrosis) became downregulated, and pathway related oxygen transport became upregulated. Additionally, we identified 11 proteins as candidate biomarkers for severe PS. Conclusions/Significance Development of severe PS is related to increased expression of proteins involved in glycolytic pathway and oxygen exchange), indicative of the greater cellular activity and replication associated with early dysregulation of wound healing and aberrant tissue repair. Our findings provide new targets to study mechanisms of PS in PCM, as well as potential biomarkers.Faculdade de Medicina Universidade Federal de Mato Grosso do Sul (UFMS)Faculdade de Medicina Universidade Estadual Paulista (UNESP)Faculdade de Odontologia de Bauru (FOB) Universidade de São Paulo (USP)Faculdade de Medicina Universidade Estadual Paulista (UNESP)Universidade Federal de Mato Grosso do Sul (UFMS)Universidade Estadual Paulista (UNESP)Universidade de São Paulo (USP)Dos Santos, Amanda Ribeiro [UNESP]Dionizio, AlineDa Silva Fernandes, MileniRabelo Buzalaf, Marılia AfonsoPereira, Beatriz [UNESP]De Fatima Almeida Donanzam, Debora [UNESP]Marrone Ribeiro, Sergio [UNESP]Miranda Paniago, Anamaria MelloDe Souza Cavalcante, Ricardo [UNESP]Mendes, Rinaldo Poncio [UNESP]Venturini, James [UNESP]2022-05-01T09:00:51Z2022-05-01T09:00:51Z2021-08-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1371/journal.pntd.0009714PLoS Neglected Tropical Diseases, v. 15, n. 8, 2021.1935-27351935-2727http://hdl.handle.net/11449/23350710.1371/journal.pntd.00097142-s2.0-85114418020Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPLoS Neglected Tropical Diseasesinfo:eu-repo/semantics/openAccess2024-08-15T15:23:14Zoai:repositorio.unesp.br:11449/233507Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-15T15:23:14Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel
title Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel
spellingShingle Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel
Dos Santos, Amanda Ribeiro [UNESP]
title_short Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel
title_full Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel
title_fullStr Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel
title_full_unstemmed Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel
title_sort Proteomic analysis of serum samples of paracoccidioidomycosis patients with severe pulmonary sequel
author Dos Santos, Amanda Ribeiro [UNESP]
author_facet Dos Santos, Amanda Ribeiro [UNESP]
Dionizio, Aline
Da Silva Fernandes, Mileni
Rabelo Buzalaf, Marılia Afonso
Pereira, Beatriz [UNESP]
De Fatima Almeida Donanzam, Debora [UNESP]
Marrone Ribeiro, Sergio [UNESP]
Miranda Paniago, Anamaria Mello
De Souza Cavalcante, Ricardo [UNESP]
Mendes, Rinaldo Poncio [UNESP]
Venturini, James [UNESP]
author_role author
author2 Dionizio, Aline
Da Silva Fernandes, Mileni
Rabelo Buzalaf, Marılia Afonso
Pereira, Beatriz [UNESP]
De Fatima Almeida Donanzam, Debora [UNESP]
Marrone Ribeiro, Sergio [UNESP]
Miranda Paniago, Anamaria Mello
De Souza Cavalcante, Ricardo [UNESP]
Mendes, Rinaldo Poncio [UNESP]
Venturini, James [UNESP]
author2_role author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Federal de Mato Grosso do Sul (UFMS)
Universidade Estadual Paulista (UNESP)
Universidade de São Paulo (USP)
dc.contributor.author.fl_str_mv Dos Santos, Amanda Ribeiro [UNESP]
Dionizio, Aline
Da Silva Fernandes, Mileni
Rabelo Buzalaf, Marılia Afonso
Pereira, Beatriz [UNESP]
De Fatima Almeida Donanzam, Debora [UNESP]
Marrone Ribeiro, Sergio [UNESP]
Miranda Paniago, Anamaria Mello
De Souza Cavalcante, Ricardo [UNESP]
Mendes, Rinaldo Poncio [UNESP]
Venturini, James [UNESP]
description Background Pulmonary sequelae (PS) in patients with chronic paracoccidioidomycosis (PCM) typically include pulmonary fibrosis and emphysema. Knowledge of the molecular pathways involved in PS of PCM is required for treatment and biomarker identification. Methodology/Principal findings This non-concurrent cohort study included 29 patients with pulmonary PCM that were followed before and after treatment. From this group, 17 patients evolved to mild/ moderate PS and 12 evolved severe PS. Sera from patients were evaluated before treatment and at clinical cure, serological cure, and apparent cure. A nanoACQUITY UPLC-Xevo QT MS system and PLGS software were used to identify serum differentially expressed proteins, data are available via ProteomeXchange with identifier PXD026906. Serum differentially expressed proteins were then categorized using Cytoscape software and the Reactome pathway database. Seventy-two differentially expressed serum proteins were identified in patients with severe PS compared with patients with mild/moderate PS. Most proteins altered in severe PS were involved in wound healing, inflammatory response, and oxygen transport pathways. Before treatment and at clinical cure, signaling proteins participating in wound healing, complement cascade, cholesterol transport and retinoid metabolism pathways were downregulated in patients with severe PS, whereas signaling proteins in gluconeogenesis and gas exchange pathways were upregulated. At serological cure, the pattern of protein expression reversed. At apparent cure pathways related with tissue repair (fibrosis) became downregulated, and pathway related oxygen transport became upregulated. Additionally, we identified 11 proteins as candidate biomarkers for severe PS. Conclusions/Significance Development of severe PS is related to increased expression of proteins involved in glycolytic pathway and oxygen exchange), indicative of the greater cellular activity and replication associated with early dysregulation of wound healing and aberrant tissue repair. Our findings provide new targets to study mechanisms of PS in PCM, as well as potential biomarkers.
publishDate 2021
dc.date.none.fl_str_mv 2021-08-01
2022-05-01T09:00:51Z
2022-05-01T09:00:51Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1371/journal.pntd.0009714
PLoS Neglected Tropical Diseases, v. 15, n. 8, 2021.
1935-2735
1935-2727
http://hdl.handle.net/11449/233507
10.1371/journal.pntd.0009714
2-s2.0-85114418020
url http://dx.doi.org/10.1371/journal.pntd.0009714
http://hdl.handle.net/11449/233507
identifier_str_mv PLoS Neglected Tropical Diseases, v. 15, n. 8, 2021.
1935-2735
1935-2727
10.1371/journal.pntd.0009714
2-s2.0-85114418020
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv PLoS Neglected Tropical Diseases
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
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reponame:Repositório Institucional da UNESP
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instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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