Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups

Detalhes bibliográficos
Autor(a) principal: García-Melo, Jorge E.
Data de Publicação: 2019
Outros Autores: Oliveira, Claudio [UNESP], Da Costa Silva, Guilherme José [UNESP], Ochoa-Orrego, Luz E. [UNESP], Garcia Pereira, Luiz Henrique, Maldonado-Ocampo, Javier A.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1371/journal.pone.0216786
http://hdl.handle.net/11449/189213
Resumo: Accurate species delimitation is crucial for studies of phylogeny, phylogeography, ecology, conservation and biogeography. The limits of species and genera in the Characidae family are controversial due to its uncertain phylogenetic relationships, high level of morphological homoplasy and the use of ambiguous morphological characters for descriptions. Here we establish species boundaries for Bryconamericus, Hemibrycon, Knodus and Eretmobrycon (Stevardiinae: Characidae), previously diagnosed with morphology, using three different barcoding approaches (GMYC, PTP, ABGD). Results revealed that species delimitation was successful by the use of a single-gene approach and by following a workflow in the context of integrative taxonomy, making evident problems and mistakes in the cataloging of Characidae species. Hence, it was possible to infer boundaries at genus level for clusters in the trees (GMYC and PTP) and automatic partitions (ABGD) which were consistent with some of recent taxonomic changes proposed in Characidae. We found that discordance cases between methods were linked to limitations of the methods and associated to putative species cluster closely related, some historically problematic in their diagnosis and identification. Furthermore, we suggested taxonomic changes and possibly new species, revealing a high degree of hidden diversity. Finally, we propose a workflow as a fast, accurate and objective way to delimit species from mitochondrial DNA sequences and to help clarify the classification of this group.
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spelling Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groupsAccurate species delimitation is crucial for studies of phylogeny, phylogeography, ecology, conservation and biogeography. The limits of species and genera in the Characidae family are controversial due to its uncertain phylogenetic relationships, high level of morphological homoplasy and the use of ambiguous morphological characters for descriptions. Here we establish species boundaries for Bryconamericus, Hemibrycon, Knodus and Eretmobrycon (Stevardiinae: Characidae), previously diagnosed with morphology, using three different barcoding approaches (GMYC, PTP, ABGD). Results revealed that species delimitation was successful by the use of a single-gene approach and by following a workflow in the context of integrative taxonomy, making evident problems and mistakes in the cataloging of Characidae species. Hence, it was possible to infer boundaries at genus level for clusters in the trees (GMYC and PTP) and automatic partitions (ABGD) which were consistent with some of recent taxonomic changes proposed in Characidae. We found that discordance cases between methods were linked to limitations of the methods and associated to putative species cluster closely related, some historically problematic in their diagnosis and identification. Furthermore, we suggested taxonomic changes and possibly new species, revealing a high degree of hidden diversity. Finally, we propose a workflow as a fast, accurate and objective way to delimit species from mitochondrial DNA sequences and to help clarify the classification of this group.Advanced Manufacturing OfficeVicerrectoría de Investigación, Universidad de Costa RicaFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)CYTED Ciencia y Tecnología para el DesarrolloGeneral Motors CorporationLaboratorio de Ictiología Unidad de Ecología y Sistemática (UNESIS) Departamento de Biología Facultad de Ciencias Pontificia Universidad JaverianaDepartamento de Morfologia Instituto de Biociências Universidade Estadual Paulista (UNESP) Campus de BotucatuUniversidade Santo Amaro Rua Prof. Enéas de Siqueira Neto Jardim das ImbuiasCentro de Ciências da Vida e da Natureza Universidade Federal da Integração Latino-Americana–UNILAPrograma de Biología Ambiental Facultad de Ciencias Naturales y Matemáticas Universidad de IbaguéDepartamento de Morfologia Instituto de Biociências Universidade Estadual Paulista (UNESP) Campus de BotucatuVicerrectoría de Investigación, Universidad de Costa Rica: 00006552FAPESP: 2010/17009-2CNPq: 306054/2006-0CYTED Ciencia y Tecnología para el Desarrollo: 567/2012Pontificia Universidad JaverianaUniversidade Estadual Paulista (Unesp)Jardim das ImbuiasUniversidade Federal da Integração Latino-Americana–UNILAUniversidad de IbaguéGarcía-Melo, Jorge E.Oliveira, Claudio [UNESP]Da Costa Silva, Guilherme José [UNESP]Ochoa-Orrego, Luz E. [UNESP]Garcia Pereira, Luiz HenriqueMaldonado-Ocampo, Javier A.2019-10-06T16:33:34Z2019-10-06T16:33:34Z2019-06-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1371/journal.pone.0216786PLoS ONE, v. 14, n. 6, 2019.1932-6203http://hdl.handle.net/11449/18921310.1371/journal.pone.02167862-s2.0-85066814458Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPLoS ONEinfo:eu-repo/semantics/openAccess2021-10-23T00:00:23Zoai:repositorio.unesp.br:11449/189213Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T22:31:08.441145Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups
title Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups
spellingShingle Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups
García-Melo, Jorge E.
title_short Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups
title_full Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups
title_fullStr Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups
title_full_unstemmed Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups
title_sort Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups
author García-Melo, Jorge E.
author_facet García-Melo, Jorge E.
Oliveira, Claudio [UNESP]
Da Costa Silva, Guilherme José [UNESP]
Ochoa-Orrego, Luz E. [UNESP]
Garcia Pereira, Luiz Henrique
Maldonado-Ocampo, Javier A.
author_role author
author2 Oliveira, Claudio [UNESP]
Da Costa Silva, Guilherme José [UNESP]
Ochoa-Orrego, Luz E. [UNESP]
Garcia Pereira, Luiz Henrique
Maldonado-Ocampo, Javier A.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Pontificia Universidad Javeriana
Universidade Estadual Paulista (Unesp)
Jardim das Imbuias
Universidade Federal da Integração Latino-Americana–UNILA
Universidad de Ibagué
dc.contributor.author.fl_str_mv García-Melo, Jorge E.
Oliveira, Claudio [UNESP]
Da Costa Silva, Guilherme José [UNESP]
Ochoa-Orrego, Luz E. [UNESP]
Garcia Pereira, Luiz Henrique
Maldonado-Ocampo, Javier A.
description Accurate species delimitation is crucial for studies of phylogeny, phylogeography, ecology, conservation and biogeography. The limits of species and genera in the Characidae family are controversial due to its uncertain phylogenetic relationships, high level of morphological homoplasy and the use of ambiguous morphological characters for descriptions. Here we establish species boundaries for Bryconamericus, Hemibrycon, Knodus and Eretmobrycon (Stevardiinae: Characidae), previously diagnosed with morphology, using three different barcoding approaches (GMYC, PTP, ABGD). Results revealed that species delimitation was successful by the use of a single-gene approach and by following a workflow in the context of integrative taxonomy, making evident problems and mistakes in the cataloging of Characidae species. Hence, it was possible to infer boundaries at genus level for clusters in the trees (GMYC and PTP) and automatic partitions (ABGD) which were consistent with some of recent taxonomic changes proposed in Characidae. We found that discordance cases between methods were linked to limitations of the methods and associated to putative species cluster closely related, some historically problematic in their diagnosis and identification. Furthermore, we suggested taxonomic changes and possibly new species, revealing a high degree of hidden diversity. Finally, we propose a workflow as a fast, accurate and objective way to delimit species from mitochondrial DNA sequences and to help clarify the classification of this group.
publishDate 2019
dc.date.none.fl_str_mv 2019-10-06T16:33:34Z
2019-10-06T16:33:34Z
2019-06-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1371/journal.pone.0216786
PLoS ONE, v. 14, n. 6, 2019.
1932-6203
http://hdl.handle.net/11449/189213
10.1371/journal.pone.0216786
2-s2.0-85066814458
url http://dx.doi.org/10.1371/journal.pone.0216786
http://hdl.handle.net/11449/189213
identifier_str_mv PLoS ONE, v. 14, n. 6, 2019.
1932-6203
10.1371/journal.pone.0216786
2-s2.0-85066814458
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv PLoS ONE
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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