Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns

Detalhes bibliográficos
Autor(a) principal: Oliveira, Domingos Lucas Latorre de
Data de Publicação: 2014
Outros Autores: Nascimento, Marcelo Zanchetta do, Neves, Leandro Alves [UNESP], Batista, Valério Ramos, Godoy, Moacir Fernandes de, Jacomini, Ricardo Souza, Duarte, Yan Anderson Siriano, Arruda, P F F, Neto, D S
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://iopscience.iop.org/1742-6596/490/1/012151/
http://hdl.handle.net/11449/122440
Resumo: In this paper we presente a classification system that uses a combination of texture features from stromal regions: Haralick features and Local Binary Patterns (LBP) in wavelet domain. The system has five steps for classification of the tissues. First, the stromal regions were detected and extracted using segmentation techniques based on thresholding and RGB colour space. Second, the Wavelet decomposition was applied in the extracted regions to obtain the Wavelet coefficients. Third, the Haralick and LBP features were extracted from the coefficients. Fourth, relevant features were selected using the ANOVA statistical method. The classication (fifth step) was performed with Radial Basis Function (RBF) networks. The system was tested in 105 prostate images, which were divided into three groups of 35 images: normal, hyperplastic and cancerous. The system performance was evaluated using the area under the ROC curve and resulted in 0.98 for normal versus cancer, 0.95 for hyperplasia versus cancer and 0.96 for normal versus hyperplasia. Our results suggest that texture features can be used as discriminators for stromal tissues prostate images. Furthermore, the system was effective to classify prostate images, specially the hyperplastic class which is the most difficult type in diagnosis and prognosis.
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spelling Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary PatternsIn this paper we presente a classification system that uses a combination of texture features from stromal regions: Haralick features and Local Binary Patterns (LBP) in wavelet domain. The system has five steps for classification of the tissues. First, the stromal regions were detected and extracted using segmentation techniques based on thresholding and RGB colour space. Second, the Wavelet decomposition was applied in the extracted regions to obtain the Wavelet coefficients. Third, the Haralick and LBP features were extracted from the coefficients. Fourth, relevant features were selected using the ANOVA statistical method. The classication (fifth step) was performed with Radial Basis Function (RBF) networks. The system was tested in 105 prostate images, which were divided into three groups of 35 images: normal, hyperplastic and cancerous. The system performance was evaluated using the area under the ROC curve and resulted in 0.98 for normal versus cancer, 0.95 for hyperplasia versus cancer and 0.96 for normal versus hyperplasia. Our results suggest that texture features can be used as discriminators for stromal tissues prostate images. Furthermore, the system was effective to classify prostate images, specially the hyperplastic class which is the most difficult type in diagnosis and prognosis.Universidade Estadual Paulista Júlio de Mesquita Filho, Departamento de Ciência da Computação e Estatística, Instituto de Biociências Letras e Ciências Exatas de São José do Rio Preto, São José do Rio Preto, Rua Cristóvão Colombo, 2265, Jardim Nazareth, CEP 15054000, SP, BrasilUniversidade Estadual Paulista Júlio de Mesquita Filho, Departamento de Ciência da Computação e Estatística, Instituto de Biociências Letras e Ciências Exatas de São José do Rio PretoUniversidade Federal do ABC (UFABC)Universidade Federal de Uberlândia (UFU)Universidade Estadual Paulista (Unesp)Faculdade de Medicina de São José do Rio Preto (FAMERP)Centro Educacional Fundação Salvador Arena (CEFSA)Fundação Faculdade Regional de Medicina (FUNFARME)Oliveira, Domingos Lucas Latorre deNascimento, Marcelo Zanchetta doNeves, Leandro Alves [UNESP]Batista, Valério RamosGodoy, Moacir Fernandes deJacomini, Ricardo SouzaDuarte, Yan Anderson SirianoArruda, P F FNeto, D S2015-04-27T11:55:45Z2015-04-27T11:55:45Z2014info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1-4application/pdfhttp://iopscience.iop.org/1742-6596/490/1/012151/Journal of Physics. Conference Series, v. 490, 2014.1742-6596http://hdl.handle.net/11449/12244010.1088/1742-6596/490/1/012151ISSN1742-6596-2014-490-012151.pdf2139053814879312Currículo Lattesreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Physics. Conference Series0,241info:eu-repo/semantics/openAccess2024-01-07T06:23:30Zoai:repositorio.unesp.br:11449/122440Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T22:20:15.343845Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns
title Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns
spellingShingle Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns
Oliveira, Domingos Lucas Latorre de
title_short Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns
title_full Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns
title_fullStr Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns
title_full_unstemmed Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns
title_sort Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns
author Oliveira, Domingos Lucas Latorre de
author_facet Oliveira, Domingos Lucas Latorre de
Nascimento, Marcelo Zanchetta do
Neves, Leandro Alves [UNESP]
Batista, Valério Ramos
Godoy, Moacir Fernandes de
Jacomini, Ricardo Souza
Duarte, Yan Anderson Siriano
Arruda, P F F
Neto, D S
author_role author
author2 Nascimento, Marcelo Zanchetta do
Neves, Leandro Alves [UNESP]
Batista, Valério Ramos
Godoy, Moacir Fernandes de
Jacomini, Ricardo Souza
Duarte, Yan Anderson Siriano
Arruda, P F F
Neto, D S
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Federal do ABC (UFABC)
Universidade Federal de Uberlândia (UFU)
Universidade Estadual Paulista (Unesp)
Faculdade de Medicina de São José do Rio Preto (FAMERP)
Centro Educacional Fundação Salvador Arena (CEFSA)
Fundação Faculdade Regional de Medicina (FUNFARME)
dc.contributor.author.fl_str_mv Oliveira, Domingos Lucas Latorre de
Nascimento, Marcelo Zanchetta do
Neves, Leandro Alves [UNESP]
Batista, Valério Ramos
Godoy, Moacir Fernandes de
Jacomini, Ricardo Souza
Duarte, Yan Anderson Siriano
Arruda, P F F
Neto, D S
description In this paper we presente a classification system that uses a combination of texture features from stromal regions: Haralick features and Local Binary Patterns (LBP) in wavelet domain. The system has five steps for classification of the tissues. First, the stromal regions were detected and extracted using segmentation techniques based on thresholding and RGB colour space. Second, the Wavelet decomposition was applied in the extracted regions to obtain the Wavelet coefficients. Third, the Haralick and LBP features were extracted from the coefficients. Fourth, relevant features were selected using the ANOVA statistical method. The classication (fifth step) was performed with Radial Basis Function (RBF) networks. The system was tested in 105 prostate images, which were divided into three groups of 35 images: normal, hyperplastic and cancerous. The system performance was evaluated using the area under the ROC curve and resulted in 0.98 for normal versus cancer, 0.95 for hyperplasia versus cancer and 0.96 for normal versus hyperplasia. Our results suggest that texture features can be used as discriminators for stromal tissues prostate images. Furthermore, the system was effective to classify prostate images, specially the hyperplastic class which is the most difficult type in diagnosis and prognosis.
publishDate 2014
dc.date.none.fl_str_mv 2014
2015-04-27T11:55:45Z
2015-04-27T11:55:45Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://iopscience.iop.org/1742-6596/490/1/012151/
Journal of Physics. Conference Series, v. 490, 2014.
1742-6596
http://hdl.handle.net/11449/122440
10.1088/1742-6596/490/1/012151
ISSN1742-6596-2014-490-012151.pdf
2139053814879312
url http://iopscience.iop.org/1742-6596/490/1/012151/
http://hdl.handle.net/11449/122440
identifier_str_mv Journal of Physics. Conference Series, v. 490, 2014.
1742-6596
10.1088/1742-6596/490/1/012151
ISSN1742-6596-2014-490-012151.pdf
2139053814879312
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Journal of Physics. Conference Series
0,241
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 1-4
application/pdf
dc.source.none.fl_str_mv Currículo Lattes
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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