Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns
Autor(a) principal: | |
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Data de Publicação: | 2014 |
Outros Autores: | , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://iopscience.iop.org/1742-6596/490/1/012151/ http://hdl.handle.net/11449/122440 |
Resumo: | In this paper we presente a classification system that uses a combination of texture features from stromal regions: Haralick features and Local Binary Patterns (LBP) in wavelet domain. The system has five steps for classification of the tissues. First, the stromal regions were detected and extracted using segmentation techniques based on thresholding and RGB colour space. Second, the Wavelet decomposition was applied in the extracted regions to obtain the Wavelet coefficients. Third, the Haralick and LBP features were extracted from the coefficients. Fourth, relevant features were selected using the ANOVA statistical method. The classication (fifth step) was performed with Radial Basis Function (RBF) networks. The system was tested in 105 prostate images, which were divided into three groups of 35 images: normal, hyperplastic and cancerous. The system performance was evaluated using the area under the ROC curve and resulted in 0.98 for normal versus cancer, 0.95 for hyperplasia versus cancer and 0.96 for normal versus hyperplasia. Our results suggest that texture features can be used as discriminators for stromal tissues prostate images. Furthermore, the system was effective to classify prostate images, specially the hyperplastic class which is the most difficult type in diagnosis and prognosis. |
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spelling |
Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary PatternsIn this paper we presente a classification system that uses a combination of texture features from stromal regions: Haralick features and Local Binary Patterns (LBP) in wavelet domain. The system has five steps for classification of the tissues. First, the stromal regions were detected and extracted using segmentation techniques based on thresholding and RGB colour space. Second, the Wavelet decomposition was applied in the extracted regions to obtain the Wavelet coefficients. Third, the Haralick and LBP features were extracted from the coefficients. Fourth, relevant features were selected using the ANOVA statistical method. The classication (fifth step) was performed with Radial Basis Function (RBF) networks. The system was tested in 105 prostate images, which were divided into three groups of 35 images: normal, hyperplastic and cancerous. The system performance was evaluated using the area under the ROC curve and resulted in 0.98 for normal versus cancer, 0.95 for hyperplasia versus cancer and 0.96 for normal versus hyperplasia. Our results suggest that texture features can be used as discriminators for stromal tissues prostate images. Furthermore, the system was effective to classify prostate images, specially the hyperplastic class which is the most difficult type in diagnosis and prognosis.Universidade Estadual Paulista Júlio de Mesquita Filho, Departamento de Ciência da Computação e Estatística, Instituto de Biociências Letras e Ciências Exatas de São José do Rio Preto, São José do Rio Preto, Rua Cristóvão Colombo, 2265, Jardim Nazareth, CEP 15054000, SP, BrasilUniversidade Estadual Paulista Júlio de Mesquita Filho, Departamento de Ciência da Computação e Estatística, Instituto de Biociências Letras e Ciências Exatas de São José do Rio PretoUniversidade Federal do ABC (UFABC)Universidade Federal de Uberlândia (UFU)Universidade Estadual Paulista (Unesp)Faculdade de Medicina de São José do Rio Preto (FAMERP)Centro Educacional Fundação Salvador Arena (CEFSA)Fundação Faculdade Regional de Medicina (FUNFARME)Oliveira, Domingos Lucas Latorre deNascimento, Marcelo Zanchetta doNeves, Leandro Alves [UNESP]Batista, Valério RamosGodoy, Moacir Fernandes deJacomini, Ricardo SouzaDuarte, Yan Anderson SirianoArruda, P F FNeto, D S2015-04-27T11:55:45Z2015-04-27T11:55:45Z2014info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1-4application/pdfhttp://iopscience.iop.org/1742-6596/490/1/012151/Journal of Physics. Conference Series, v. 490, 2014.1742-6596http://hdl.handle.net/11449/12244010.1088/1742-6596/490/1/012151ISSN1742-6596-2014-490-012151.pdf2139053814879312Currículo Lattesreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Physics. Conference Series0,241info:eu-repo/semantics/openAccess2024-01-07T06:23:30Zoai:repositorio.unesp.br:11449/122440Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T22:20:15.343845Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns |
title |
Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns |
spellingShingle |
Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns Oliveira, Domingos Lucas Latorre de |
title_short |
Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns |
title_full |
Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns |
title_fullStr |
Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns |
title_full_unstemmed |
Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns |
title_sort |
Automatic classification of prostate stromal tissue in histological images using Haralick descriptors and Local Binary Patterns |
author |
Oliveira, Domingos Lucas Latorre de |
author_facet |
Oliveira, Domingos Lucas Latorre de Nascimento, Marcelo Zanchetta do Neves, Leandro Alves [UNESP] Batista, Valério Ramos Godoy, Moacir Fernandes de Jacomini, Ricardo Souza Duarte, Yan Anderson Siriano Arruda, P F F Neto, D S |
author_role |
author |
author2 |
Nascimento, Marcelo Zanchetta do Neves, Leandro Alves [UNESP] Batista, Valério Ramos Godoy, Moacir Fernandes de Jacomini, Ricardo Souza Duarte, Yan Anderson Siriano Arruda, P F F Neto, D S |
author2_role |
author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Federal do ABC (UFABC) Universidade Federal de Uberlândia (UFU) Universidade Estadual Paulista (Unesp) Faculdade de Medicina de São José do Rio Preto (FAMERP) Centro Educacional Fundação Salvador Arena (CEFSA) Fundação Faculdade Regional de Medicina (FUNFARME) |
dc.contributor.author.fl_str_mv |
Oliveira, Domingos Lucas Latorre de Nascimento, Marcelo Zanchetta do Neves, Leandro Alves [UNESP] Batista, Valério Ramos Godoy, Moacir Fernandes de Jacomini, Ricardo Souza Duarte, Yan Anderson Siriano Arruda, P F F Neto, D S |
description |
In this paper we presente a classification system that uses a combination of texture features from stromal regions: Haralick features and Local Binary Patterns (LBP) in wavelet domain. The system has five steps for classification of the tissues. First, the stromal regions were detected and extracted using segmentation techniques based on thresholding and RGB colour space. Second, the Wavelet decomposition was applied in the extracted regions to obtain the Wavelet coefficients. Third, the Haralick and LBP features were extracted from the coefficients. Fourth, relevant features were selected using the ANOVA statistical method. The classication (fifth step) was performed with Radial Basis Function (RBF) networks. The system was tested in 105 prostate images, which were divided into three groups of 35 images: normal, hyperplastic and cancerous. The system performance was evaluated using the area under the ROC curve and resulted in 0.98 for normal versus cancer, 0.95 for hyperplasia versus cancer and 0.96 for normal versus hyperplasia. Our results suggest that texture features can be used as discriminators for stromal tissues prostate images. Furthermore, the system was effective to classify prostate images, specially the hyperplastic class which is the most difficult type in diagnosis and prognosis. |
publishDate |
2014 |
dc.date.none.fl_str_mv |
2014 2015-04-27T11:55:45Z 2015-04-27T11:55:45Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://iopscience.iop.org/1742-6596/490/1/012151/ Journal of Physics. Conference Series, v. 490, 2014. 1742-6596 http://hdl.handle.net/11449/122440 10.1088/1742-6596/490/1/012151 ISSN1742-6596-2014-490-012151.pdf 2139053814879312 |
url |
http://iopscience.iop.org/1742-6596/490/1/012151/ http://hdl.handle.net/11449/122440 |
identifier_str_mv |
Journal of Physics. Conference Series, v. 490, 2014. 1742-6596 10.1088/1742-6596/490/1/012151 ISSN1742-6596-2014-490-012151.pdf 2139053814879312 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Journal of Physics. Conference Series 0,241 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
1-4 application/pdf |
dc.source.none.fl_str_mv |
Currículo Lattes reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808129416377663488 |