Development and transferability of microsatellite markers for species of the saltans group of Drosophila (Diptera: Drosophilidae)

Detalhes bibliográficos
Autor(a) principal: Roman, B. E. [UNESP]
Data de Publicação: 2020
Outros Autores: Trava, B. M. [UNESP], Madi-Ravazzi, L. [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.4238/gmr18700
http://hdl.handle.net/11449/210052
Resumo: Microsatellite markers, also known as single sequence repeats (SSRs), are highly polymorphic, fast evolving, and regarded as neutral markers. Due to these traits, they have been widely used in population studies. The development of SSRs for a given species opens possibilities for their application in population studies of other species that are phylogenetically related. We tested 16 primer pairs developed for Drosophila sturtevanti and the transferability test of them in 14 species of the saltans group of Drosophila. The optimal amplification conditions were established using the DNA of 15 D. sturtevanti males. Among the primers pairs developed, 13 have successful in the amplification for D. sturtevanti. And in the transferability test, the total percentage of transfer was nearly 50%. The species with the highest success rates of heterologous amplification were in the sturtevanti subgroup. Two microsatellite markers amplified in all the species, while one would not amplify for any of the saltans group species. These data demonstrate the usefulness of testing transferability of genetic markers, which may be used in studies of genetic diversity and population structure of D. sturtevanti and other species of the saltans group of Drosophila.
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spelling Development and transferability of microsatellite markers for species of the saltans group of Drosophila (Diptera: Drosophilidae)Genetic diversityGenomic libraryMolecular markersNeutral markersSSRMicrosatellite markers, also known as single sequence repeats (SSRs), are highly polymorphic, fast evolving, and regarded as neutral markers. Due to these traits, they have been widely used in population studies. The development of SSRs for a given species opens possibilities for their application in population studies of other species that are phylogenetically related. We tested 16 primer pairs developed for Drosophila sturtevanti and the transferability test of them in 14 species of the saltans group of Drosophila. The optimal amplification conditions were established using the DNA of 15 D. sturtevanti males. Among the primers pairs developed, 13 have successful in the amplification for D. sturtevanti. And in the transferability test, the total percentage of transfer was nearly 50%. The species with the highest success rates of heterologous amplification were in the sturtevanti subgroup. Two microsatellite markers amplified in all the species, while one would not amplify for any of the saltans group species. These data demonstrate the usefulness of testing transferability of genetic markers, which may be used in studies of genetic diversity and population structure of D. sturtevanti and other species of the saltans group of Drosophila.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Univ Estadual Paulista, Inst Biociencias Letras & Ciencias Exatas, Dept Biol, Sao Jose Do Rio Preto, SP, BrazilUniv Estadual Paulista, Inst Biociencias Letras & Ciencias Exatas, Dept Biol, Sao Jose Do Rio Preto, SP, BrazilFAPESP: 2014/14059-0FAPESP: 2015/17579-7FAPESP: 2017/05344-0Funpec-editoraUniversidade Estadual Paulista (Unesp)Roman, B. E. [UNESP]Trava, B. M. [UNESP]Madi-Ravazzi, L. [UNESP]2021-06-25T12:38:12Z2021-06-25T12:38:12Z2020-10-30info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article7http://dx.doi.org/10.4238/gmr18700Genetics And Molecular Research. Ribeirao Preto: Funpec-editora, v. 19, n. 4, 7 p., 2020.http://hdl.handle.net/11449/21005210.4238/gmr18700WOS:000619558000001Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengGenetics And Molecular Researchinfo:eu-repo/semantics/openAccess2021-10-23T20:11:08Zoai:repositorio.unesp.br:11449/210052Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T23:11:51.336457Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Development and transferability of microsatellite markers for species of the saltans group of Drosophila (Diptera: Drosophilidae)
title Development and transferability of microsatellite markers for species of the saltans group of Drosophila (Diptera: Drosophilidae)
spellingShingle Development and transferability of microsatellite markers for species of the saltans group of Drosophila (Diptera: Drosophilidae)
Roman, B. E. [UNESP]
Genetic diversity
Genomic library
Molecular markers
Neutral markers
SSR
title_short Development and transferability of microsatellite markers for species of the saltans group of Drosophila (Diptera: Drosophilidae)
title_full Development and transferability of microsatellite markers for species of the saltans group of Drosophila (Diptera: Drosophilidae)
title_fullStr Development and transferability of microsatellite markers for species of the saltans group of Drosophila (Diptera: Drosophilidae)
title_full_unstemmed Development and transferability of microsatellite markers for species of the saltans group of Drosophila (Diptera: Drosophilidae)
title_sort Development and transferability of microsatellite markers for species of the saltans group of Drosophila (Diptera: Drosophilidae)
author Roman, B. E. [UNESP]
author_facet Roman, B. E. [UNESP]
Trava, B. M. [UNESP]
Madi-Ravazzi, L. [UNESP]
author_role author
author2 Trava, B. M. [UNESP]
Madi-Ravazzi, L. [UNESP]
author2_role author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Roman, B. E. [UNESP]
Trava, B. M. [UNESP]
Madi-Ravazzi, L. [UNESP]
dc.subject.por.fl_str_mv Genetic diversity
Genomic library
Molecular markers
Neutral markers
SSR
topic Genetic diversity
Genomic library
Molecular markers
Neutral markers
SSR
description Microsatellite markers, also known as single sequence repeats (SSRs), are highly polymorphic, fast evolving, and regarded as neutral markers. Due to these traits, they have been widely used in population studies. The development of SSRs for a given species opens possibilities for their application in population studies of other species that are phylogenetically related. We tested 16 primer pairs developed for Drosophila sturtevanti and the transferability test of them in 14 species of the saltans group of Drosophila. The optimal amplification conditions were established using the DNA of 15 D. sturtevanti males. Among the primers pairs developed, 13 have successful in the amplification for D. sturtevanti. And in the transferability test, the total percentage of transfer was nearly 50%. The species with the highest success rates of heterologous amplification were in the sturtevanti subgroup. Two microsatellite markers amplified in all the species, while one would not amplify for any of the saltans group species. These data demonstrate the usefulness of testing transferability of genetic markers, which may be used in studies of genetic diversity and population structure of D. sturtevanti and other species of the saltans group of Drosophila.
publishDate 2020
dc.date.none.fl_str_mv 2020-10-30
2021-06-25T12:38:12Z
2021-06-25T12:38:12Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.4238/gmr18700
Genetics And Molecular Research. Ribeirao Preto: Funpec-editora, v. 19, n. 4, 7 p., 2020.
http://hdl.handle.net/11449/210052
10.4238/gmr18700
WOS:000619558000001
url http://dx.doi.org/10.4238/gmr18700
http://hdl.handle.net/11449/210052
identifier_str_mv Genetics And Molecular Research. Ribeirao Preto: Funpec-editora, v. 19, n. 4, 7 p., 2020.
10.4238/gmr18700
WOS:000619558000001
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Genetics And Molecular Research
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 7
dc.publisher.none.fl_str_mv Funpec-editora
publisher.none.fl_str_mv Funpec-editora
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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