Dysbiosis and predicted function of dental and ruminal microbiome associated with bovine periodontitis
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.3389/fmicb.2022.936021 http://hdl.handle.net/11449/241566 |
Resumo: | Extensive cattle livestock is advancing in Amazonia and its low productivity, with consequent pressure to open new areas, is partly due to sanitary problems and, among them, the periodontal diseases, whose environmental triggers or modifying factors are unknown. In this study, we used high-throughput sequencing, network analysis and predicted functions to investigate the dental and ruminal microbiota of cattle raised in new livestock areas in the Amazon and identify possible keystone pathogens and proteins associated with the disease. Ninety-three genera were common in dental and ruminal fluid microbiomes and among them periodontal pathogens such as Fusobacterium, Prevotella, Porphyromonas and Actinomyces were recognized. Network analysis showed that dental microbiomes of clinically healthy animals tend to comprise a group of OTUs in homeostasis and when analyzed together, dental and ruminal fluid microbiomes of animals with periodontitis had almost twice the number of negative edges, indicating possible competition between bacteria and dysbiosis. The incisor dental and ruminal fluid microbiomes were dominated by a core community composed of members of the phyla Firmicutes and Bacteroidetes. Network results showed that members of the Prevotella genus stood out among the top five OTUs, with the largest number of hubs in the dental and ruminal microbiota of animals with periodontitis. Protein families linked to an inflammatory environment were predicted in the dental and ruminal microbiota of cattle with periodontitis. The dissimilarity between dental microbiomes, discriminating between healthy cattle and those with periodontitis and the identification of possible key pathogens, represent an important reference to elucidate the triggers involved in the etiopathogenesis of bovine periodontitis, and possibly in the development of measures to control the disease and reduce the pressures for deforestation. |
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Dysbiosis and predicted function of dental and ruminal microbiome associated with bovine periodontitisAmazonbiodiversitybovinedental microbiomeperiodontitisPrevotellaruminal fluid microbiomeExtensive cattle livestock is advancing in Amazonia and its low productivity, with consequent pressure to open new areas, is partly due to sanitary problems and, among them, the periodontal diseases, whose environmental triggers or modifying factors are unknown. In this study, we used high-throughput sequencing, network analysis and predicted functions to investigate the dental and ruminal microbiota of cattle raised in new livestock areas in the Amazon and identify possible keystone pathogens and proteins associated with the disease. Ninety-three genera were common in dental and ruminal fluid microbiomes and among them periodontal pathogens such as Fusobacterium, Prevotella, Porphyromonas and Actinomyces were recognized. Network analysis showed that dental microbiomes of clinically healthy animals tend to comprise a group of OTUs in homeostasis and when analyzed together, dental and ruminal fluid microbiomes of animals with periodontitis had almost twice the number of negative edges, indicating possible competition between bacteria and dysbiosis. The incisor dental and ruminal fluid microbiomes were dominated by a core community composed of members of the phyla Firmicutes and Bacteroidetes. Network results showed that members of the Prevotella genus stood out among the top five OTUs, with the largest number of hubs in the dental and ruminal microbiota of animals with periodontitis. Protein families linked to an inflammatory environment were predicted in the dental and ruminal microbiota of cattle with periodontitis. The dissimilarity between dental microbiomes, discriminating between healthy cattle and those with periodontitis and the identification of possible key pathogens, represent an important reference to elucidate the triggers involved in the etiopathogenesis of bovine periodontitis, and possibly in the development of measures to control the disease and reduce the pressures for deforestation.National Academies of Sciences, Engineering, and MedicineDepartment of Veterinary Medicine School of Veterinary Medicine and Animal Science Universidade Federal de Goiás (UFG), GoiásDepartment of Production and Animal Health School of Veterinary Medicine São Paulo State University (Unesp)Dental School University of GlasgowDepartment of Preventive Dentistry Academic Centre for Dentistry Amsterdam University of Amsterdam and VU University AmsterdamDepartment of Soil Universidade Federal Rural do Rio de Janeiro, Rio de JaneiroNational Agrobiology Research Center Embrapa AgrobiologiaDepartment of Diagnosis and Surgery Dental School São Paulo State University (Unesp)Department of Mathematics School of Engineering São Paulo State University (Unesp), Ilha SolteiraDepartment of Production and Animal Health School of Veterinary Medicine São Paulo State University (Unesp)Department of Diagnosis and Surgery Dental School São Paulo State University (Unesp)Department of Mathematics School of Engineering São Paulo State University (Unesp), Ilha SolteiraUniversidade Federal de Goiás (UFG)Universidade Estadual Paulista (UNESP)University of GlasgowUniversity of Amsterdam and VU University AmsterdamUniversidade Federal Rural do Rio de JaneiroEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Borsanelli, Ana C.Athayde, Flávia R. F. [UNESP]Riggio, Marcello P.Brandt, Bernd W.Rocha, Fernando I.Jesus, Ederson C.Gaetti-Jardim, Elerson [UNESP]Schweitzer, Christiane M. [UNESP]Dutra, Iveraldo S. [UNESP]2023-03-01T21:10:26Z2023-03-01T21:10:26Z2022-08-12info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3389/fmicb.2022.936021Frontiers in Microbiology, v. 13.1664-302Xhttp://hdl.handle.net/11449/24156610.3389/fmicb.2022.9360212-s2.0-85136815299Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengFrontiers in Microbiologyinfo:eu-repo/semantics/openAccess2024-07-10T15:41:36Zoai:repositorio.unesp.br:11449/241566Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T14:42:40.099626Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Dysbiosis and predicted function of dental and ruminal microbiome associated with bovine periodontitis |
title |
Dysbiosis and predicted function of dental and ruminal microbiome associated with bovine periodontitis |
spellingShingle |
Dysbiosis and predicted function of dental and ruminal microbiome associated with bovine periodontitis Borsanelli, Ana C. Amazon biodiversity bovine dental microbiome periodontitis Prevotella ruminal fluid microbiome |
title_short |
Dysbiosis and predicted function of dental and ruminal microbiome associated with bovine periodontitis |
title_full |
Dysbiosis and predicted function of dental and ruminal microbiome associated with bovine periodontitis |
title_fullStr |
Dysbiosis and predicted function of dental and ruminal microbiome associated with bovine periodontitis |
title_full_unstemmed |
Dysbiosis and predicted function of dental and ruminal microbiome associated with bovine periodontitis |
title_sort |
Dysbiosis and predicted function of dental and ruminal microbiome associated with bovine periodontitis |
author |
Borsanelli, Ana C. |
author_facet |
Borsanelli, Ana C. Athayde, Flávia R. F. [UNESP] Riggio, Marcello P. Brandt, Bernd W. Rocha, Fernando I. Jesus, Ederson C. Gaetti-Jardim, Elerson [UNESP] Schweitzer, Christiane M. [UNESP] Dutra, Iveraldo S. [UNESP] |
author_role |
author |
author2 |
Athayde, Flávia R. F. [UNESP] Riggio, Marcello P. Brandt, Bernd W. Rocha, Fernando I. Jesus, Ederson C. Gaetti-Jardim, Elerson [UNESP] Schweitzer, Christiane M. [UNESP] Dutra, Iveraldo S. [UNESP] |
author2_role |
author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Federal de Goiás (UFG) Universidade Estadual Paulista (UNESP) University of Glasgow University of Amsterdam and VU University Amsterdam Universidade Federal Rural do Rio de Janeiro Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA) |
dc.contributor.author.fl_str_mv |
Borsanelli, Ana C. Athayde, Flávia R. F. [UNESP] Riggio, Marcello P. Brandt, Bernd W. Rocha, Fernando I. Jesus, Ederson C. Gaetti-Jardim, Elerson [UNESP] Schweitzer, Christiane M. [UNESP] Dutra, Iveraldo S. [UNESP] |
dc.subject.por.fl_str_mv |
Amazon biodiversity bovine dental microbiome periodontitis Prevotella ruminal fluid microbiome |
topic |
Amazon biodiversity bovine dental microbiome periodontitis Prevotella ruminal fluid microbiome |
description |
Extensive cattle livestock is advancing in Amazonia and its low productivity, with consequent pressure to open new areas, is partly due to sanitary problems and, among them, the periodontal diseases, whose environmental triggers or modifying factors are unknown. In this study, we used high-throughput sequencing, network analysis and predicted functions to investigate the dental and ruminal microbiota of cattle raised in new livestock areas in the Amazon and identify possible keystone pathogens and proteins associated with the disease. Ninety-three genera were common in dental and ruminal fluid microbiomes and among them periodontal pathogens such as Fusobacterium, Prevotella, Porphyromonas and Actinomyces were recognized. Network analysis showed that dental microbiomes of clinically healthy animals tend to comprise a group of OTUs in homeostasis and when analyzed together, dental and ruminal fluid microbiomes of animals with periodontitis had almost twice the number of negative edges, indicating possible competition between bacteria and dysbiosis. The incisor dental and ruminal fluid microbiomes were dominated by a core community composed of members of the phyla Firmicutes and Bacteroidetes. Network results showed that members of the Prevotella genus stood out among the top five OTUs, with the largest number of hubs in the dental and ruminal microbiota of animals with periodontitis. Protein families linked to an inflammatory environment were predicted in the dental and ruminal microbiota of cattle with periodontitis. The dissimilarity between dental microbiomes, discriminating between healthy cattle and those with periodontitis and the identification of possible key pathogens, represent an important reference to elucidate the triggers involved in the etiopathogenesis of bovine periodontitis, and possibly in the development of measures to control the disease and reduce the pressures for deforestation. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-08-12 2023-03-01T21:10:26Z 2023-03-01T21:10:26Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.3389/fmicb.2022.936021 Frontiers in Microbiology, v. 13. 1664-302X http://hdl.handle.net/11449/241566 10.3389/fmicb.2022.936021 2-s2.0-85136815299 |
url |
http://dx.doi.org/10.3389/fmicb.2022.936021 http://hdl.handle.net/11449/241566 |
identifier_str_mv |
Frontiers in Microbiology, v. 13. 1664-302X 10.3389/fmicb.2022.936021 2-s2.0-85136815299 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Frontiers in Microbiology |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
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1808128407915986944 |