Occurrence of dead core in catalytic particles containing immobilized enzymes: analysis for the Michaelis–Menten kinetics and assessment of numerical methods

Detalhes bibliográficos
Autor(a) principal: Pereira, Félix Monteiro
Data de Publicação: 2016
Outros Autores: Oliveira, Samuel Conceição [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1007/s00449-016-1647-0
http://hdl.handle.net/11449/173147
Resumo: In this article, the occurrence of dead core in catalytic particles containing immobilized enzymes is analyzed for the Michaelis–Menten kinetics. An assessment of numerical methods is performed to solve the boundary value problem generated by the mathematical modeling of diffusion and reaction processes under steady state and isothermal conditions. Two classes of numerical methods were employed: shooting and collocation. The shooting method used the ode function from Scilab software. The collocation methods included: that implemented by the bvode function of Scilab, the orthogonal collocation, and the orthogonal collocation on finite elements. The methods were validated for simplified forms of the Michaelis–Menten equation (zero-order and first-order kinetics), for which analytical solutions are available. Among the methods covered in this article, the orthogonal collocation on finite elements proved to be the most robust and efficient method to solve the boundary value problem concerning Michaelis–Menten kinetics. For this enzyme kinetics, it was found that the dead core can occur when verified certain conditions of diffusion–reaction within the catalytic particle. The application of the concepts and methods presented in this study will allow for a more generalized analysis and more accurate designs of heterogeneous enzymatic reactors.
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spelling Occurrence of dead core in catalytic particles containing immobilized enzymes: analysis for the Michaelis–Menten kinetics and assessment of numerical methodsDead coreDiffusion and reactionEffectiveness factorImmobilized enzymesMichaelis–Menten kineticsIn this article, the occurrence of dead core in catalytic particles containing immobilized enzymes is analyzed for the Michaelis–Menten kinetics. An assessment of numerical methods is performed to solve the boundary value problem generated by the mathematical modeling of diffusion and reaction processes under steady state and isothermal conditions. Two classes of numerical methods were employed: shooting and collocation. The shooting method used the ode function from Scilab software. The collocation methods included: that implemented by the bvode function of Scilab, the orthogonal collocation, and the orthogonal collocation on finite elements. The methods were validated for simplified forms of the Michaelis–Menten equation (zero-order and first-order kinetics), for which analytical solutions are available. Among the methods covered in this article, the orthogonal collocation on finite elements proved to be the most robust and efficient method to solve the boundary value problem concerning Michaelis–Menten kinetics. For this enzyme kinetics, it was found that the dead core can occur when verified certain conditions of diffusion–reaction within the catalytic particle. The application of the concepts and methods presented in this study will allow for a more generalized analysis and more accurate designs of heterogeneous enzymatic reactors.Departamento de Engenharia Química Escola de Engenharia de Lorena USP–Universidade de São Paulo, Estrada Municipal do CampinhoDepartamento de Bioprocessos e Biotecnologia Faculdade de Ciências Farmacêuticas UNESP–Univ Estadual Paulista, Rodovia Araraquara-Jaú Km 1Departamento de Bioprocessos e Biotecnologia Faculdade de Ciências Farmacêuticas UNESP–Univ Estadual Paulista, Rodovia Araraquara-Jaú Km 1Universidade de São Paulo (USP)Universidade Estadual Paulista (Unesp)Pereira, Félix MonteiroOliveira, Samuel Conceição [UNESP]2018-12-11T17:03:51Z2018-12-11T17:03:51Z2016-11-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1717-1727application/pdfhttp://dx.doi.org/10.1007/s00449-016-1647-0Bioprocess and Biosystems Engineering, v. 39, n. 11, p. 1717-1727, 2016.1615-76051615-7591http://hdl.handle.net/11449/17314710.1007/s00449-016-1647-02-s2.0-849765147862-s2.0-84976514786.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBioprocess and Biosystems Engineering0,6400,640info:eu-repo/semantics/openAccess2023-11-30T06:16:58Zoai:repositorio.unesp.br:11449/173147Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T19:09:28.580832Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Occurrence of dead core in catalytic particles containing immobilized enzymes: analysis for the Michaelis–Menten kinetics and assessment of numerical methods
title Occurrence of dead core in catalytic particles containing immobilized enzymes: analysis for the Michaelis–Menten kinetics and assessment of numerical methods
spellingShingle Occurrence of dead core in catalytic particles containing immobilized enzymes: analysis for the Michaelis–Menten kinetics and assessment of numerical methods
Pereira, Félix Monteiro
Dead core
Diffusion and reaction
Effectiveness factor
Immobilized enzymes
Michaelis–Menten kinetics
title_short Occurrence of dead core in catalytic particles containing immobilized enzymes: analysis for the Michaelis–Menten kinetics and assessment of numerical methods
title_full Occurrence of dead core in catalytic particles containing immobilized enzymes: analysis for the Michaelis–Menten kinetics and assessment of numerical methods
title_fullStr Occurrence of dead core in catalytic particles containing immobilized enzymes: analysis for the Michaelis–Menten kinetics and assessment of numerical methods
title_full_unstemmed Occurrence of dead core in catalytic particles containing immobilized enzymes: analysis for the Michaelis–Menten kinetics and assessment of numerical methods
title_sort Occurrence of dead core in catalytic particles containing immobilized enzymes: analysis for the Michaelis–Menten kinetics and assessment of numerical methods
author Pereira, Félix Monteiro
author_facet Pereira, Félix Monteiro
Oliveira, Samuel Conceição [UNESP]
author_role author
author2 Oliveira, Samuel Conceição [UNESP]
author2_role author
dc.contributor.none.fl_str_mv Universidade de São Paulo (USP)
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Pereira, Félix Monteiro
Oliveira, Samuel Conceição [UNESP]
dc.subject.por.fl_str_mv Dead core
Diffusion and reaction
Effectiveness factor
Immobilized enzymes
Michaelis–Menten kinetics
topic Dead core
Diffusion and reaction
Effectiveness factor
Immobilized enzymes
Michaelis–Menten kinetics
description In this article, the occurrence of dead core in catalytic particles containing immobilized enzymes is analyzed for the Michaelis–Menten kinetics. An assessment of numerical methods is performed to solve the boundary value problem generated by the mathematical modeling of diffusion and reaction processes under steady state and isothermal conditions. Two classes of numerical methods were employed: shooting and collocation. The shooting method used the ode function from Scilab software. The collocation methods included: that implemented by the bvode function of Scilab, the orthogonal collocation, and the orthogonal collocation on finite elements. The methods were validated for simplified forms of the Michaelis–Menten equation (zero-order and first-order kinetics), for which analytical solutions are available. Among the methods covered in this article, the orthogonal collocation on finite elements proved to be the most robust and efficient method to solve the boundary value problem concerning Michaelis–Menten kinetics. For this enzyme kinetics, it was found that the dead core can occur when verified certain conditions of diffusion–reaction within the catalytic particle. The application of the concepts and methods presented in this study will allow for a more generalized analysis and more accurate designs of heterogeneous enzymatic reactors.
publishDate 2016
dc.date.none.fl_str_mv 2016-11-01
2018-12-11T17:03:51Z
2018-12-11T17:03:51Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1007/s00449-016-1647-0
Bioprocess and Biosystems Engineering, v. 39, n. 11, p. 1717-1727, 2016.
1615-7605
1615-7591
http://hdl.handle.net/11449/173147
10.1007/s00449-016-1647-0
2-s2.0-84976514786
2-s2.0-84976514786.pdf
url http://dx.doi.org/10.1007/s00449-016-1647-0
http://hdl.handle.net/11449/173147
identifier_str_mv Bioprocess and Biosystems Engineering, v. 39, n. 11, p. 1717-1727, 2016.
1615-7605
1615-7591
10.1007/s00449-016-1647-0
2-s2.0-84976514786
2-s2.0-84976514786.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Bioprocess and Biosystems Engineering
0,640
0,640
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 1717-1727
application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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