Classification of histological images based on the stationary wavelet transform

Detalhes bibliográficos
Autor(a) principal: Nascimento, Marcelo Zanchetta do
Data de Publicação: 2015
Outros Autores: Neves, Leandro Alves [UNESP], Duarte, Sidon Cléo, Duarte, Yan Anderson Siriano, Batista, Valério Ramos
Tipo de documento: Artigo de conferência
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://iopscience.iop.org/article/10.1088/1742-6596/574/1/012133/meta
http://hdl.handle.net/11449/128819
Resumo: Non-Hodgkin lymphomas are of many distinct types, and different classification systems make it difficult to diagnose them correctly. Many of these systems classify lymphomas only based on what they look like under a microscope. In 2008 the World Health Organisation (WHO) introduced the most recent system, which also considers the chromosome features of the lymphoma cells and the presence of certain proteins on their surface. The WHO system is the one that we apply in this work. Herewith we present an automatic method to classify histological images of three types of non-Hodgkin lymphoma. Our method is based on the Stationary Wavelet Transform (SWT), and it consists of three steps: 1) extracting sub-bands from the histological image through SWT, 2) applying Analysis of Variance (ANOVA) to clean noise and select the most relevant information, 3) classifying it by the Support Vector Machine (SVM) algorithm. The kernel types Linear, RBF and Polynomial were evaluated with our method applied to 210 images of lymphoma from the National Institute on Aging. We concluded that the following combination led to the most relevant results: detail sub-band, ANOVA and SVM with Linear and RBF kernels.
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spelling Classification of histological images based on the stationary wavelet transformNon-Hodgkin lymphomas are of many distinct types, and different classification systems make it difficult to diagnose them correctly. Many of these systems classify lymphomas only based on what they look like under a microscope. In 2008 the World Health Organisation (WHO) introduced the most recent system, which also considers the chromosome features of the lymphoma cells and the presence of certain proteins on their surface. The WHO system is the one that we apply in this work. Herewith we present an automatic method to classify histological images of three types of non-Hodgkin lymphoma. Our method is based on the Stationary Wavelet Transform (SWT), and it consists of three steps: 1) extracting sub-bands from the histological image through SWT, 2) applying Analysis of Variance (ANOVA) to clean noise and select the most relevant information, 3) classifying it by the Support Vector Machine (SVM) algorithm. The kernel types Linear, RBF and Polynomial were evaluated with our method applied to 210 images of lymphoma from the National Institute on Aging. We concluded that the following combination led to the most relevant results: detail sub-band, ANOVA and SVM with Linear and RBF kernels.Universidade Federal de Uberlândia, Faculdade de Ciência da ComputaçãoUniversidade Federal do ABC, Centro de Matemática, Ciência da Computação e CogniçãoUniversidade Estadual Paulista, Departamento de Ciência da Computação e Estatística, Instituto de Biociências, Letras e Ciências Exatas de São José do Rio PretoIop Publishing LtdUniversidade Federal de Uberlândia (UFU)Universidade Estadual Paulista (Unesp)Universidade Federal do ABC (UFABC)Nascimento, Marcelo Zanchetta doNeves, Leandro Alves [UNESP]Duarte, Sidon CléoDuarte, Yan Anderson SirianoBatista, Valério Ramos2015-10-21T13:14:00Z2015-10-21T13:14:00Z2015-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/conferenceObject1-4application/pdfhttp://iopscience.iop.org/article/10.1088/1742-6596/574/1/012133/meta3rd International Conference On Mathematical Modeling In Physical Sciences (IC-MSQUARE 2014). Bristol: Iop Publishing Ltd, v. 574, p. 1-4, 2015.1742-6588http://hdl.handle.net/11449/12881910.1088/1742-6596/574/1/012133WOS:000352595600133WOS000352595600133.pdf2139053814879312Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPeng3rd International Conference On Mathematical Modeling In Physical Sciences (IC-MSQUARE 2014)0,241info:eu-repo/semantics/openAccess2024-01-18T06:26:37Zoai:repositorio.unesp.br:11449/128819Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T23:21:06.058097Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Classification of histological images based on the stationary wavelet transform
title Classification of histological images based on the stationary wavelet transform
spellingShingle Classification of histological images based on the stationary wavelet transform
Nascimento, Marcelo Zanchetta do
title_short Classification of histological images based on the stationary wavelet transform
title_full Classification of histological images based on the stationary wavelet transform
title_fullStr Classification of histological images based on the stationary wavelet transform
title_full_unstemmed Classification of histological images based on the stationary wavelet transform
title_sort Classification of histological images based on the stationary wavelet transform
author Nascimento, Marcelo Zanchetta do
author_facet Nascimento, Marcelo Zanchetta do
Neves, Leandro Alves [UNESP]
Duarte, Sidon Cléo
Duarte, Yan Anderson Siriano
Batista, Valério Ramos
author_role author
author2 Neves, Leandro Alves [UNESP]
Duarte, Sidon Cléo
Duarte, Yan Anderson Siriano
Batista, Valério Ramos
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade Federal de Uberlândia (UFU)
Universidade Estadual Paulista (Unesp)
Universidade Federal do ABC (UFABC)
dc.contributor.author.fl_str_mv Nascimento, Marcelo Zanchetta do
Neves, Leandro Alves [UNESP]
Duarte, Sidon Cléo
Duarte, Yan Anderson Siriano
Batista, Valério Ramos
description Non-Hodgkin lymphomas are of many distinct types, and different classification systems make it difficult to diagnose them correctly. Many of these systems classify lymphomas only based on what they look like under a microscope. In 2008 the World Health Organisation (WHO) introduced the most recent system, which also considers the chromosome features of the lymphoma cells and the presence of certain proteins on their surface. The WHO system is the one that we apply in this work. Herewith we present an automatic method to classify histological images of three types of non-Hodgkin lymphoma. Our method is based on the Stationary Wavelet Transform (SWT), and it consists of three steps: 1) extracting sub-bands from the histological image through SWT, 2) applying Analysis of Variance (ANOVA) to clean noise and select the most relevant information, 3) classifying it by the Support Vector Machine (SVM) algorithm. The kernel types Linear, RBF and Polynomial were evaluated with our method applied to 210 images of lymphoma from the National Institute on Aging. We concluded that the following combination led to the most relevant results: detail sub-band, ANOVA and SVM with Linear and RBF kernels.
publishDate 2015
dc.date.none.fl_str_mv 2015-10-21T13:14:00Z
2015-10-21T13:14:00Z
2015-01-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/conferenceObject
format conferenceObject
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://iopscience.iop.org/article/10.1088/1742-6596/574/1/012133/meta
3rd International Conference On Mathematical Modeling In Physical Sciences (IC-MSQUARE 2014). Bristol: Iop Publishing Ltd, v. 574, p. 1-4, 2015.
1742-6588
http://hdl.handle.net/11449/128819
10.1088/1742-6596/574/1/012133
WOS:000352595600133
WOS000352595600133.pdf
2139053814879312
url http://iopscience.iop.org/article/10.1088/1742-6596/574/1/012133/meta
http://hdl.handle.net/11449/128819
identifier_str_mv 3rd International Conference On Mathematical Modeling In Physical Sciences (IC-MSQUARE 2014). Bristol: Iop Publishing Ltd, v. 574, p. 1-4, 2015.
1742-6588
10.1088/1742-6596/574/1/012133
WOS:000352595600133
WOS000352595600133.pdf
2139053814879312
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 3rd International Conference On Mathematical Modeling In Physical Sciences (IC-MSQUARE 2014)
0,241
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 1-4
application/pdf
dc.publisher.none.fl_str_mv Iop Publishing Ltd
publisher.none.fl_str_mv Iop Publishing Ltd
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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