Classification of histological images based on the stationary wavelet transform
Autor(a) principal: | |
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Data de Publicação: | 2015 |
Outros Autores: | , , , |
Tipo de documento: | Artigo de conferência |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://iopscience.iop.org/article/10.1088/1742-6596/574/1/012133/meta http://hdl.handle.net/11449/128819 |
Resumo: | Non-Hodgkin lymphomas are of many distinct types, and different classification systems make it difficult to diagnose them correctly. Many of these systems classify lymphomas only based on what they look like under a microscope. In 2008 the World Health Organisation (WHO) introduced the most recent system, which also considers the chromosome features of the lymphoma cells and the presence of certain proteins on their surface. The WHO system is the one that we apply in this work. Herewith we present an automatic method to classify histological images of three types of non-Hodgkin lymphoma. Our method is based on the Stationary Wavelet Transform (SWT), and it consists of three steps: 1) extracting sub-bands from the histological image through SWT, 2) applying Analysis of Variance (ANOVA) to clean noise and select the most relevant information, 3) classifying it by the Support Vector Machine (SVM) algorithm. The kernel types Linear, RBF and Polynomial were evaluated with our method applied to 210 images of lymphoma from the National Institute on Aging. We concluded that the following combination led to the most relevant results: detail sub-band, ANOVA and SVM with Linear and RBF kernels. |
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Classification of histological images based on the stationary wavelet transformNon-Hodgkin lymphomas are of many distinct types, and different classification systems make it difficult to diagnose them correctly. Many of these systems classify lymphomas only based on what they look like under a microscope. In 2008 the World Health Organisation (WHO) introduced the most recent system, which also considers the chromosome features of the lymphoma cells and the presence of certain proteins on their surface. The WHO system is the one that we apply in this work. Herewith we present an automatic method to classify histological images of three types of non-Hodgkin lymphoma. Our method is based on the Stationary Wavelet Transform (SWT), and it consists of three steps: 1) extracting sub-bands from the histological image through SWT, 2) applying Analysis of Variance (ANOVA) to clean noise and select the most relevant information, 3) classifying it by the Support Vector Machine (SVM) algorithm. The kernel types Linear, RBF and Polynomial were evaluated with our method applied to 210 images of lymphoma from the National Institute on Aging. We concluded that the following combination led to the most relevant results: detail sub-band, ANOVA and SVM with Linear and RBF kernels.Universidade Federal de Uberlândia, Faculdade de Ciência da ComputaçãoUniversidade Federal do ABC, Centro de Matemática, Ciência da Computação e CogniçãoUniversidade Estadual Paulista, Departamento de Ciência da Computação e Estatística, Instituto de Biociências, Letras e Ciências Exatas de São José do Rio PretoIop Publishing LtdUniversidade Federal de Uberlândia (UFU)Universidade Estadual Paulista (Unesp)Universidade Federal do ABC (UFABC)Nascimento, Marcelo Zanchetta doNeves, Leandro Alves [UNESP]Duarte, Sidon CléoDuarte, Yan Anderson SirianoBatista, Valério Ramos2015-10-21T13:14:00Z2015-10-21T13:14:00Z2015-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/conferenceObject1-4application/pdfhttp://iopscience.iop.org/article/10.1088/1742-6596/574/1/012133/meta3rd International Conference On Mathematical Modeling In Physical Sciences (IC-MSQUARE 2014). Bristol: Iop Publishing Ltd, v. 574, p. 1-4, 2015.1742-6588http://hdl.handle.net/11449/12881910.1088/1742-6596/574/1/012133WOS:000352595600133WOS000352595600133.pdf2139053814879312Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPeng3rd International Conference On Mathematical Modeling In Physical Sciences (IC-MSQUARE 2014)0,241info:eu-repo/semantics/openAccess2024-01-18T06:26:37Zoai:repositorio.unesp.br:11449/128819Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T23:21:06.058097Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Classification of histological images based on the stationary wavelet transform |
title |
Classification of histological images based on the stationary wavelet transform |
spellingShingle |
Classification of histological images based on the stationary wavelet transform Nascimento, Marcelo Zanchetta do |
title_short |
Classification of histological images based on the stationary wavelet transform |
title_full |
Classification of histological images based on the stationary wavelet transform |
title_fullStr |
Classification of histological images based on the stationary wavelet transform |
title_full_unstemmed |
Classification of histological images based on the stationary wavelet transform |
title_sort |
Classification of histological images based on the stationary wavelet transform |
author |
Nascimento, Marcelo Zanchetta do |
author_facet |
Nascimento, Marcelo Zanchetta do Neves, Leandro Alves [UNESP] Duarte, Sidon Cléo Duarte, Yan Anderson Siriano Batista, Valério Ramos |
author_role |
author |
author2 |
Neves, Leandro Alves [UNESP] Duarte, Sidon Cléo Duarte, Yan Anderson Siriano Batista, Valério Ramos |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
Universidade Federal de Uberlândia (UFU) Universidade Estadual Paulista (Unesp) Universidade Federal do ABC (UFABC) |
dc.contributor.author.fl_str_mv |
Nascimento, Marcelo Zanchetta do Neves, Leandro Alves [UNESP] Duarte, Sidon Cléo Duarte, Yan Anderson Siriano Batista, Valério Ramos |
description |
Non-Hodgkin lymphomas are of many distinct types, and different classification systems make it difficult to diagnose them correctly. Many of these systems classify lymphomas only based on what they look like under a microscope. In 2008 the World Health Organisation (WHO) introduced the most recent system, which also considers the chromosome features of the lymphoma cells and the presence of certain proteins on their surface. The WHO system is the one that we apply in this work. Herewith we present an automatic method to classify histological images of three types of non-Hodgkin lymphoma. Our method is based on the Stationary Wavelet Transform (SWT), and it consists of three steps: 1) extracting sub-bands from the histological image through SWT, 2) applying Analysis of Variance (ANOVA) to clean noise and select the most relevant information, 3) classifying it by the Support Vector Machine (SVM) algorithm. The kernel types Linear, RBF and Polynomial were evaluated with our method applied to 210 images of lymphoma from the National Institute on Aging. We concluded that the following combination led to the most relevant results: detail sub-band, ANOVA and SVM with Linear and RBF kernels. |
publishDate |
2015 |
dc.date.none.fl_str_mv |
2015-10-21T13:14:00Z 2015-10-21T13:14:00Z 2015-01-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/conferenceObject |
format |
conferenceObject |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://iopscience.iop.org/article/10.1088/1742-6596/574/1/012133/meta 3rd International Conference On Mathematical Modeling In Physical Sciences (IC-MSQUARE 2014). Bristol: Iop Publishing Ltd, v. 574, p. 1-4, 2015. 1742-6588 http://hdl.handle.net/11449/128819 10.1088/1742-6596/574/1/012133 WOS:000352595600133 WOS000352595600133.pdf 2139053814879312 |
url |
http://iopscience.iop.org/article/10.1088/1742-6596/574/1/012133/meta http://hdl.handle.net/11449/128819 |
identifier_str_mv |
3rd International Conference On Mathematical Modeling In Physical Sciences (IC-MSQUARE 2014). Bristol: Iop Publishing Ltd, v. 574, p. 1-4, 2015. 1742-6588 10.1088/1742-6596/574/1/012133 WOS:000352595600133 WOS000352595600133.pdf 2139053814879312 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
3rd International Conference On Mathematical Modeling In Physical Sciences (IC-MSQUARE 2014) 0,241 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
1-4 application/pdf |
dc.publisher.none.fl_str_mv |
Iop Publishing Ltd |
publisher.none.fl_str_mv |
Iop Publishing Ltd |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
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1808129509643255808 |