Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1155/2017/9769171 http://hdl.handle.net/11449/231409 |
Resumo: | lncRNAs are acquiring increasing relevance as regulators in a wide spectrum of biological processes. The extreme heterogeneity in the mechanisms of action of these molecules, however, makes them very difficult to study, especially regarding their molecular function. A novel lncRNA has been recently identified as the most enriched transcript in mouse developing thyroid. Due to its genomic localization antisense to the protein-encoding Klhl14 gene, we named it Klhl14-AS. In this paper, we highlight that mouse Klhl14-AS produces at least five splicing variants, some of which have not been previously described. Klhl14-AS is expressed with a peculiar pattern, characterized by diverse relative abundance of its isoforms in different mouse tissues. We examine the whole expression level of Klhl14-AS in a panel of adult mouse tissues, showing that it is expressed in the thyroid, lung, kidney, testis, ovary, brain, and spleen, although at different levels. In situ hybridization analysis reveals that, in the context of each organ, Klhl14-AS shows a cell type-specific expression. Interestingly, databases report a similar expression profile for human Klhl14-AS. Our observations suggest that this lncRNA could play cell type-specific roles in several organs and pave the way for functional characterization of this gene in appropriate biological contexts. |
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Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in MouselncRNAs are acquiring increasing relevance as regulators in a wide spectrum of biological processes. The extreme heterogeneity in the mechanisms of action of these molecules, however, makes them very difficult to study, especially regarding their molecular function. A novel lncRNA has been recently identified as the most enriched transcript in mouse developing thyroid. Due to its genomic localization antisense to the protein-encoding Klhl14 gene, we named it Klhl14-AS. In this paper, we highlight that mouse Klhl14-AS produces at least five splicing variants, some of which have not been previously described. Klhl14-AS is expressed with a peculiar pattern, characterized by diverse relative abundance of its isoforms in different mouse tissues. We examine the whole expression level of Klhl14-AS in a panel of adult mouse tissues, showing that it is expressed in the thyroid, lung, kidney, testis, ovary, brain, and spleen, although at different levels. In situ hybridization analysis reveals that, in the context of each organ, Klhl14-AS shows a cell type-specific expression. Interestingly, databases report a similar expression profile for human Klhl14-AS. Our observations suggest that this lncRNA could play cell type-specific roles in several organs and pave the way for functional characterization of this gene in appropriate biological contexts.European CommissionDipartimento di Medicina Molecolare e Biotecnologie Mediche Università degli Studi di Napoli Federico II, Via S. Pansini 5Department of Internal Medicine Botucatu School of Medicine University of São Paulo StateDepartment of Medical Biochemistry and Cell Biology Institute of Biomedicine Sahlgrenska Academy University of GothenburgDipartimento di Sanità Pubblica Università degli Studi di Napoli Federico II, Via S. Pansini 5Biology and Evolution of Marine Organisms Stazione Zoologica Anton Dohrn, Villa Comunale 1European Commission: RNA-REGULOMICS 318981Università degli Studi di Napoli Federico IIUniversidade de São Paulo (USP)University of GothenburgStazione Zoologica Anton DohrnCredendino, Sara CarmelaLewin, NicoleDe Oliveira, MirianeBasu, SwarajD'Andrea, BarbaraAmendola, ElenaDi Guida, LuigiNardone, AntonioSanges, RemoDe Felice, MarioDe Vita, Gabriella2022-04-29T08:45:19Z2022-04-29T08:45:19Z2017-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1155/2017/9769171International Journal of Genomics, v. 2017.2314-43782314-436Xhttp://hdl.handle.net/11449/23140910.1155/2017/97691712-s2.0-85030632928Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengInternational Journal of Genomicsinfo:eu-repo/semantics/openAccess2024-08-14T17:36:32Zoai:repositorio.unesp.br:11449/231409Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-14T17:36:32Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse |
title |
Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse |
spellingShingle |
Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse Credendino, Sara Carmela |
title_short |
Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse |
title_full |
Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse |
title_fullStr |
Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse |
title_full_unstemmed |
Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse |
title_sort |
Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse |
author |
Credendino, Sara Carmela |
author_facet |
Credendino, Sara Carmela Lewin, Nicole De Oliveira, Miriane Basu, Swaraj D'Andrea, Barbara Amendola, Elena Di Guida, Luigi Nardone, Antonio Sanges, Remo De Felice, Mario De Vita, Gabriella |
author_role |
author |
author2 |
Lewin, Nicole De Oliveira, Miriane Basu, Swaraj D'Andrea, Barbara Amendola, Elena Di Guida, Luigi Nardone, Antonio Sanges, Remo De Felice, Mario De Vita, Gabriella |
author2_role |
author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Università degli Studi di Napoli Federico II Universidade de São Paulo (USP) University of Gothenburg Stazione Zoologica Anton Dohrn |
dc.contributor.author.fl_str_mv |
Credendino, Sara Carmela Lewin, Nicole De Oliveira, Miriane Basu, Swaraj D'Andrea, Barbara Amendola, Elena Di Guida, Luigi Nardone, Antonio Sanges, Remo De Felice, Mario De Vita, Gabriella |
description |
lncRNAs are acquiring increasing relevance as regulators in a wide spectrum of biological processes. The extreme heterogeneity in the mechanisms of action of these molecules, however, makes them very difficult to study, especially regarding their molecular function. A novel lncRNA has been recently identified as the most enriched transcript in mouse developing thyroid. Due to its genomic localization antisense to the protein-encoding Klhl14 gene, we named it Klhl14-AS. In this paper, we highlight that mouse Klhl14-AS produces at least five splicing variants, some of which have not been previously described. Klhl14-AS is expressed with a peculiar pattern, characterized by diverse relative abundance of its isoforms in different mouse tissues. We examine the whole expression level of Klhl14-AS in a panel of adult mouse tissues, showing that it is expressed in the thyroid, lung, kidney, testis, ovary, brain, and spleen, although at different levels. In situ hybridization analysis reveals that, in the context of each organ, Klhl14-AS shows a cell type-specific expression. Interestingly, databases report a similar expression profile for human Klhl14-AS. Our observations suggest that this lncRNA could play cell type-specific roles in several organs and pave the way for functional characterization of this gene in appropriate biological contexts. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-01-01 2022-04-29T08:45:19Z 2022-04-29T08:45:19Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1155/2017/9769171 International Journal of Genomics, v. 2017. 2314-4378 2314-436X http://hdl.handle.net/11449/231409 10.1155/2017/9769171 2-s2.0-85030632928 |
url |
http://dx.doi.org/10.1155/2017/9769171 http://hdl.handle.net/11449/231409 |
identifier_str_mv |
International Journal of Genomics, v. 2017. 2314-4378 2314-436X 10.1155/2017/9769171 2-s2.0-85030632928 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
International Journal of Genomics |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128194307424256 |