Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse

Detalhes bibliográficos
Autor(a) principal: Credendino, Sara Carmela
Data de Publicação: 2017
Outros Autores: Lewin, Nicole, De Oliveira, Miriane, Basu, Swaraj, D'Andrea, Barbara, Amendola, Elena, Di Guida, Luigi, Nardone, Antonio, Sanges, Remo, De Felice, Mario, De Vita, Gabriella
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1155/2017/9769171
http://hdl.handle.net/11449/231409
Resumo: lncRNAs are acquiring increasing relevance as regulators in a wide spectrum of biological processes. The extreme heterogeneity in the mechanisms of action of these molecules, however, makes them very difficult to study, especially regarding their molecular function. A novel lncRNA has been recently identified as the most enriched transcript in mouse developing thyroid. Due to its genomic localization antisense to the protein-encoding Klhl14 gene, we named it Klhl14-AS. In this paper, we highlight that mouse Klhl14-AS produces at least five splicing variants, some of which have not been previously described. Klhl14-AS is expressed with a peculiar pattern, characterized by diverse relative abundance of its isoforms in different mouse tissues. We examine the whole expression level of Klhl14-AS in a panel of adult mouse tissues, showing that it is expressed in the thyroid, lung, kidney, testis, ovary, brain, and spleen, although at different levels. In situ hybridization analysis reveals that, in the context of each organ, Klhl14-AS shows a cell type-specific expression. Interestingly, databases report a similar expression profile for human Klhl14-AS. Our observations suggest that this lncRNA could play cell type-specific roles in several organs and pave the way for functional characterization of this gene in appropriate biological contexts.
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spelling Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in MouselncRNAs are acquiring increasing relevance as regulators in a wide spectrum of biological processes. The extreme heterogeneity in the mechanisms of action of these molecules, however, makes them very difficult to study, especially regarding their molecular function. A novel lncRNA has been recently identified as the most enriched transcript in mouse developing thyroid. Due to its genomic localization antisense to the protein-encoding Klhl14 gene, we named it Klhl14-AS. In this paper, we highlight that mouse Klhl14-AS produces at least five splicing variants, some of which have not been previously described. Klhl14-AS is expressed with a peculiar pattern, characterized by diverse relative abundance of its isoforms in different mouse tissues. We examine the whole expression level of Klhl14-AS in a panel of adult mouse tissues, showing that it is expressed in the thyroid, lung, kidney, testis, ovary, brain, and spleen, although at different levels. In situ hybridization analysis reveals that, in the context of each organ, Klhl14-AS shows a cell type-specific expression. Interestingly, databases report a similar expression profile for human Klhl14-AS. Our observations suggest that this lncRNA could play cell type-specific roles in several organs and pave the way for functional characterization of this gene in appropriate biological contexts.European CommissionDipartimento di Medicina Molecolare e Biotecnologie Mediche Università degli Studi di Napoli Federico II, Via S. Pansini 5Department of Internal Medicine Botucatu School of Medicine University of São Paulo StateDepartment of Medical Biochemistry and Cell Biology Institute of Biomedicine Sahlgrenska Academy University of GothenburgDipartimento di Sanità Pubblica Università degli Studi di Napoli Federico II, Via S. Pansini 5Biology and Evolution of Marine Organisms Stazione Zoologica Anton Dohrn, Villa Comunale 1European Commission: RNA-REGULOMICS 318981Università degli Studi di Napoli Federico IIUniversidade de São Paulo (USP)University of GothenburgStazione Zoologica Anton DohrnCredendino, Sara CarmelaLewin, NicoleDe Oliveira, MirianeBasu, SwarajD'Andrea, BarbaraAmendola, ElenaDi Guida, LuigiNardone, AntonioSanges, RemoDe Felice, MarioDe Vita, Gabriella2022-04-29T08:45:19Z2022-04-29T08:45:19Z2017-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1155/2017/9769171International Journal of Genomics, v. 2017.2314-43782314-436Xhttp://hdl.handle.net/11449/23140910.1155/2017/97691712-s2.0-85030632928Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengInternational Journal of Genomicsinfo:eu-repo/semantics/openAccess2024-08-14T17:36:32Zoai:repositorio.unesp.br:11449/231409Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-14T17:36:32Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse
title Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse
spellingShingle Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse
Credendino, Sara Carmela
title_short Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse
title_full Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse
title_fullStr Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse
title_full_unstemmed Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse
title_sort Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse
author Credendino, Sara Carmela
author_facet Credendino, Sara Carmela
Lewin, Nicole
De Oliveira, Miriane
Basu, Swaraj
D'Andrea, Barbara
Amendola, Elena
Di Guida, Luigi
Nardone, Antonio
Sanges, Remo
De Felice, Mario
De Vita, Gabriella
author_role author
author2 Lewin, Nicole
De Oliveira, Miriane
Basu, Swaraj
D'Andrea, Barbara
Amendola, Elena
Di Guida, Luigi
Nardone, Antonio
Sanges, Remo
De Felice, Mario
De Vita, Gabriella
author2_role author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Università degli Studi di Napoli Federico II
Universidade de São Paulo (USP)
University of Gothenburg
Stazione Zoologica Anton Dohrn
dc.contributor.author.fl_str_mv Credendino, Sara Carmela
Lewin, Nicole
De Oliveira, Miriane
Basu, Swaraj
D'Andrea, Barbara
Amendola, Elena
Di Guida, Luigi
Nardone, Antonio
Sanges, Remo
De Felice, Mario
De Vita, Gabriella
description lncRNAs are acquiring increasing relevance as regulators in a wide spectrum of biological processes. The extreme heterogeneity in the mechanisms of action of these molecules, however, makes them very difficult to study, especially regarding their molecular function. A novel lncRNA has been recently identified as the most enriched transcript in mouse developing thyroid. Due to its genomic localization antisense to the protein-encoding Klhl14 gene, we named it Klhl14-AS. In this paper, we highlight that mouse Klhl14-AS produces at least five splicing variants, some of which have not been previously described. Klhl14-AS is expressed with a peculiar pattern, characterized by diverse relative abundance of its isoforms in different mouse tissues. We examine the whole expression level of Klhl14-AS in a panel of adult mouse tissues, showing that it is expressed in the thyroid, lung, kidney, testis, ovary, brain, and spleen, although at different levels. In situ hybridization analysis reveals that, in the context of each organ, Klhl14-AS shows a cell type-specific expression. Interestingly, databases report a similar expression profile for human Klhl14-AS. Our observations suggest that this lncRNA could play cell type-specific roles in several organs and pave the way for functional characterization of this gene in appropriate biological contexts.
publishDate 2017
dc.date.none.fl_str_mv 2017-01-01
2022-04-29T08:45:19Z
2022-04-29T08:45:19Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1155/2017/9769171
International Journal of Genomics, v. 2017.
2314-4378
2314-436X
http://hdl.handle.net/11449/231409
10.1155/2017/9769171
2-s2.0-85030632928
url http://dx.doi.org/10.1155/2017/9769171
http://hdl.handle.net/11449/231409
identifier_str_mv International Journal of Genomics, v. 2017.
2314-4378
2314-436X
10.1155/2017/9769171
2-s2.0-85030632928
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv International Journal of Genomics
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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