Inteligência artificial aplicada ao estudo da diversidade genética do Banco de Germoplasma de videira da EMBRAPA Semiárido

Detalhes bibliográficos
Autor(a) principal: CALDAS, Raphael Miller de Souza
Data de Publicação: 2021
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UFRPE
Texto Completo: http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/9517
Resumo: The objective of this work was to apply artificial intelligence, through the use of the ESOM clustering algorithm, to the study of the genetic diversity of genotypes of table grapes from the Embrapa Semiárido Vine Germplasm Active Bank. The following quantitative agronomic variables of 93 table grape genotypes were evaluated: yield (kg/plant), number of clusters per plant, cluster weight (g), cluster length and width (cm), berry weight (g), length and diameter of berries (mm), soluble solids content (ºBrix), titratable acidity (g/100ml) and soluble solids/titratable acidity ratio. The experiment was carried out in the Experimental Field of Mandacaru, Juazeiro-BA, and data referring to four harvesting seasons (2018.1, 2018.2, 2019.1 and 2019.2) were analyzed. The grouping performed by the ESOM network was able to discover genetic patterns and differences between the studied table grape genotypes, allowing the formation of 10 heterotic groups. Group 0 had the highest maximum values for the variables yield (8.44 kg), cluster weight (520.19 g), cluster length (22.30 cm), cluster width (15.10 cm), weight of berry (8.00 g), berry length (26.84 mm), berry diameter (22.17 mm) and soluble solids (23.90 °Brix) and also presented the highest mean values for cluster weight (331.20 g), cluster length (16.6 cm), cluster width (10.5 cm), berry weight (5.78 g), berry length (23.5 mm) and berry diameter (19.7 mm). The presence of genetic variability for the analyzed variables was evidenced by the formation of genetic variability maps, demonstrating a broad genetic base for the 93 genotypes analyzed. The variables with less variability were cluster length and berry length. The ESOM matrix of genetic similarity indicated the most promising crosses among the 10 heterotic table grape groups based on genetic divergence. The crossing of genotypes from group 0, mostly composed of genotypes with seeds and large berries, with genotypes from group 1, 2, 4, 5 and 7, which are seedless and have smaller berries being the most indicated. Crosses between genotypes from groups 0 and 9 are not indicated. Despite being the most genetically distant groups, all individuals in group 9 have a small berry size and have seeds, characteristics considered undesirable in a table grape breeding program. ESOM proved to be promising in the analysis of genetic diversity and consequent formation of heterotic groups, in addition to indicating which crosses are more promising. Future studies on the validation of ESOM as an efficient grouping method for plant genetic improvement are indicated.
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spelling MUSSER, Rosimar dos SantosLEÃO, Patricia Coelho de SouzaNASCIMENTO, André Câmara Alves doPRUDÊNCIO, Ricardo Bastos CavalcanteMONTARROYOS, Angélica Virgínia Valoishttp://lattes.cnpq.br/6475049011154793CALDAS, Raphael Miller de Souza2024-02-20T17:26:48Z2021-08-18CALDAS, Raphael Miller de Souza. Inteligência artificial aplicada ao estudo da diversidade genética do Banco de Germoplasma de videira da EMBRAPA Semiárido. 2021. 70 f. Dissertação (Programa de Pós-Graduação em Melhoramento Genético de Plantas) - Universidade Federal Rural de Pernambuco, Recife.http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/9517The objective of this work was to apply artificial intelligence, through the use of the ESOM clustering algorithm, to the study of the genetic diversity of genotypes of table grapes from the Embrapa Semiárido Vine Germplasm Active Bank. The following quantitative agronomic variables of 93 table grape genotypes were evaluated: yield (kg/plant), number of clusters per plant, cluster weight (g), cluster length and width (cm), berry weight (g), length and diameter of berries (mm), soluble solids content (ºBrix), titratable acidity (g/100ml) and soluble solids/titratable acidity ratio. The experiment was carried out in the Experimental Field of Mandacaru, Juazeiro-BA, and data referring to four harvesting seasons (2018.1, 2018.2, 2019.1 and 2019.2) were analyzed. The grouping performed by the ESOM network was able to discover genetic patterns and differences between the studied table grape genotypes, allowing the formation of 10 heterotic groups. Group 0 had the highest maximum values for the variables yield (8.44 kg), cluster weight (520.19 g), cluster length (22.30 cm), cluster width (15.10 cm), weight of berry (8.00 g), berry length (26.84 mm), berry diameter (22.17 mm) and soluble solids (23.90 °Brix) and also presented the highest mean values for cluster weight (331.20 g), cluster length (16.6 cm), cluster width (10.5 cm), berry weight (5.78 g), berry length (23.5 mm) and berry diameter (19.7 mm). The presence of genetic variability for the analyzed variables was evidenced by the formation of genetic variability maps, demonstrating a broad genetic base for the 93 genotypes analyzed. The variables with less variability were cluster length and berry length. The ESOM matrix of genetic similarity indicated the most promising crosses among the 10 heterotic table grape groups based on genetic divergence. The crossing of genotypes from group 0, mostly composed of genotypes with seeds and large berries, with genotypes from group 1, 2, 4, 5 and 7, which are seedless and have smaller berries being the most indicated. Crosses between genotypes from groups 0 and 9 are not indicated. Despite being the most genetically distant groups, all individuals in group 9 have a small berry size and have seeds, characteristics considered undesirable in a table grape breeding program. ESOM proved to be promising in the analysis of genetic diversity and consequent formation of heterotic groups, in addition to indicating which crosses are more promising. Future studies on the validation of ESOM as an efficient grouping method for plant genetic improvement are indicated.O objetivo deste trabalho foi aplicar a inteligência artificial, através do uso do algoritmo de agrupamento Emergent self-organizing maps (ESOM), ao estudo da diversidade genética de acessos de uvas de mesa do Banco Ativo de Germoplasma de videira da Embrapa Semiárido. Foram avaliadas as seguintes variáveis agronômicas quantitativas de 93 acessos de uva de mesa: produção (kg/planta), número de cachos por planta, peso do cacho (g), comprimento e largura dos cachos (cm), peso da baga (g), comprimento e diâmetro das bagas (mm), teor de sólidos solúveis (ºBrix), acidez titulável (g/100ml) e relação de sólidos solúveis/acidez titulável. O experimento foi realizado no Campo Experimental de Mandacaru, Juazeiro-BA, sendo analisados os dados referentes a quatro safras (2018.1, 2018.2, 2019.1 e 2019.2). O agrupamento realizado pelo algoritmo ESOM foi capaz de descobrir padrões genéticos e diferenças entre os acessos de uva de mesa estudados, permitindo a formação de 10 grupos heteróticos. O grupo 0 apresentou os maiores valores máximos para as variáveis produção (8,44 kg), peso do cacho (520,19 g), comprimento do cacho (22,30 cm), largura do cacho (15,10 cm), peso da baga (8,00 g), comprimento da baga (26,84 mm), diâmetro da baga (22,17 mm) e sólidos solúveis (23,90 °Brix). Também apresentou os maiores valores médios para o peso do cacho (331,20 g), comprimento do cacho (16,6 cm), largura do cacho (10,5 cm), peso da baga (5,78 g), comprimento da baga (23,5 mm) e diâmetro da baga (19,7 mm). A presença de variabilidade genética para as variáveis analisadas foi evidenciada pela formação dos mapas de variabilidade genética, demonstrando ampla base genética para os 93 acessos analisados. A matriz ESOM de similaridade genética indicou os cruzamentos mais promissores entre os 10 grupos heteróticos de uva de mesa com base na divergência genética. O cruzamento de genótipos do grupo 0, composto por genótipos, em sua maioria, pirênicos e com bagas de tamanho grande, com genótipos dos grupo 1, 2, 4, 5 e 7, que sejam apirênicos e de bagas de tamanho menor são os mais indicados. Cruzamentos entre genótipos dos grupos 0 e 9 não são indicados. Apesar de serem os grupos mais distantes geneticamente, todos os indivíduos do grupo 9 possuem um tamanho pequeno de baga e sementes, características consideradas indesejáveis em um programa de melhoramento genético de uvas de mesa. Os ESOM se mostraram promissores na análise da diversidade genética e consequente formação de grupos heteróticos, além de indicar quais cruzamentos mais promissores. Estudos futuros sobre a validação dos ESOM como um método de agrupamento eficiente no melhoramento genético de plantas são indicados.Submitted by (ana.araujo@ufrpe.br) on 2024-02-20T17:26:47Z No. of bitstreams: 1 Raphael Miller de Souza Caldas.pdf: 1362716 bytes, checksum: 4aba7dd0b22061507c469837fb5cdda4 (MD5)Made available in DSpace on 2024-02-20T17:26:48Z (GMT). No. of bitstreams: 1 Raphael Miller de Souza Caldas.pdf: 1362716 bytes, checksum: 4aba7dd0b22061507c469837fb5cdda4 (MD5) Previous issue date: 2021-08-18application/pdfporUniversidade Federal Rural de PernambucoPrograma de Pós-Graduação em Melhoramento Genético de PlantasUFRPEBrasilDepartamento de AgronomiaVideiraVariabilidade genéticaInteligência artificialAgrupamento de dadosRecurso genéticoFITOTECNIA::MELHORAMENTO VEGETALInteligência artificial aplicada ao estudo da diversidade genética do Banco de Germoplasma de videira da EMBRAPA Semiáridoinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis-6234655866848882505600600600-68005538799722292052615607299470131967info:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UFRPEinstname:Universidade Federal Rural de Pernambuco (UFRPE)instacron:UFRPEORIGINALRaphael Miller de Souza Caldas.pdfRaphael Miller de Souza Caldas.pdfapplication/pdf1362716http://www.tede2.ufrpe.br:8080/tede2/bitstream/tede2/9517/2/Raphael+Miller+de+Souza+Caldas.pdf4aba7dd0b22061507c469837fb5cdda4MD52LICENSElicense.txtlicense.txttext/plain; charset=utf-82165http://www.tede2.ufrpe.br:8080/tede2/bitstream/tede2/9517/1/license.txtbd3efa91386c1718a7f26a329fdcb468MD51tede2/95172024-02-20 14:26:48.719oai:tede2: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Biblioteca Digital de Teses e Dissertaçõeshttp://www.tede2.ufrpe.br:8080/tede/PUBhttp://www.tede2.ufrpe.br:8080/oai/requestbdtd@ufrpe.br ||bdtd@ufrpe.bropendoar:2024-05-28T12:38:22.779693Biblioteca Digital de Teses e Dissertações da UFRPE - Universidade Federal Rural de Pernambuco (UFRPE)false
dc.title.por.fl_str_mv Inteligência artificial aplicada ao estudo da diversidade genética do Banco de Germoplasma de videira da EMBRAPA Semiárido
title Inteligência artificial aplicada ao estudo da diversidade genética do Banco de Germoplasma de videira da EMBRAPA Semiárido
spellingShingle Inteligência artificial aplicada ao estudo da diversidade genética do Banco de Germoplasma de videira da EMBRAPA Semiárido
CALDAS, Raphael Miller de Souza
Videira
Variabilidade genética
Inteligência artificial
Agrupamento de dados
Recurso genético
FITOTECNIA::MELHORAMENTO VEGETAL
title_short Inteligência artificial aplicada ao estudo da diversidade genética do Banco de Germoplasma de videira da EMBRAPA Semiárido
title_full Inteligência artificial aplicada ao estudo da diversidade genética do Banco de Germoplasma de videira da EMBRAPA Semiárido
title_fullStr Inteligência artificial aplicada ao estudo da diversidade genética do Banco de Germoplasma de videira da EMBRAPA Semiárido
title_full_unstemmed Inteligência artificial aplicada ao estudo da diversidade genética do Banco de Germoplasma de videira da EMBRAPA Semiárido
title_sort Inteligência artificial aplicada ao estudo da diversidade genética do Banco de Germoplasma de videira da EMBRAPA Semiárido
author CALDAS, Raphael Miller de Souza
author_facet CALDAS, Raphael Miller de Souza
author_role author
dc.contributor.advisor1.fl_str_mv MUSSER, Rosimar dos Santos
dc.contributor.advisor-co1.fl_str_mv LEÃO, Patricia Coelho de Souza
dc.contributor.advisor-co2.fl_str_mv NASCIMENTO, André Câmara Alves do
dc.contributor.referee1.fl_str_mv PRUDÊNCIO, Ricardo Bastos Cavalcante
dc.contributor.referee2.fl_str_mv MONTARROYOS, Angélica Virgínia Valois
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/6475049011154793
dc.contributor.author.fl_str_mv CALDAS, Raphael Miller de Souza
contributor_str_mv MUSSER, Rosimar dos Santos
LEÃO, Patricia Coelho de Souza
NASCIMENTO, André Câmara Alves do
PRUDÊNCIO, Ricardo Bastos Cavalcante
MONTARROYOS, Angélica Virgínia Valois
dc.subject.por.fl_str_mv Videira
Variabilidade genética
Inteligência artificial
Agrupamento de dados
Recurso genético
topic Videira
Variabilidade genética
Inteligência artificial
Agrupamento de dados
Recurso genético
FITOTECNIA::MELHORAMENTO VEGETAL
dc.subject.cnpq.fl_str_mv FITOTECNIA::MELHORAMENTO VEGETAL
description The objective of this work was to apply artificial intelligence, through the use of the ESOM clustering algorithm, to the study of the genetic diversity of genotypes of table grapes from the Embrapa Semiárido Vine Germplasm Active Bank. The following quantitative agronomic variables of 93 table grape genotypes were evaluated: yield (kg/plant), number of clusters per plant, cluster weight (g), cluster length and width (cm), berry weight (g), length and diameter of berries (mm), soluble solids content (ºBrix), titratable acidity (g/100ml) and soluble solids/titratable acidity ratio. The experiment was carried out in the Experimental Field of Mandacaru, Juazeiro-BA, and data referring to four harvesting seasons (2018.1, 2018.2, 2019.1 and 2019.2) were analyzed. The grouping performed by the ESOM network was able to discover genetic patterns and differences between the studied table grape genotypes, allowing the formation of 10 heterotic groups. Group 0 had the highest maximum values for the variables yield (8.44 kg), cluster weight (520.19 g), cluster length (22.30 cm), cluster width (15.10 cm), weight of berry (8.00 g), berry length (26.84 mm), berry diameter (22.17 mm) and soluble solids (23.90 °Brix) and also presented the highest mean values for cluster weight (331.20 g), cluster length (16.6 cm), cluster width (10.5 cm), berry weight (5.78 g), berry length (23.5 mm) and berry diameter (19.7 mm). The presence of genetic variability for the analyzed variables was evidenced by the formation of genetic variability maps, demonstrating a broad genetic base for the 93 genotypes analyzed. The variables with less variability were cluster length and berry length. The ESOM matrix of genetic similarity indicated the most promising crosses among the 10 heterotic table grape groups based on genetic divergence. The crossing of genotypes from group 0, mostly composed of genotypes with seeds and large berries, with genotypes from group 1, 2, 4, 5 and 7, which are seedless and have smaller berries being the most indicated. Crosses between genotypes from groups 0 and 9 are not indicated. Despite being the most genetically distant groups, all individuals in group 9 have a small berry size and have seeds, characteristics considered undesirable in a table grape breeding program. ESOM proved to be promising in the analysis of genetic diversity and consequent formation of heterotic groups, in addition to indicating which crosses are more promising. Future studies on the validation of ESOM as an efficient grouping method for plant genetic improvement are indicated.
publishDate 2021
dc.date.issued.fl_str_mv 2021-08-18
dc.date.accessioned.fl_str_mv 2024-02-20T17:26:48Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
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dc.identifier.citation.fl_str_mv CALDAS, Raphael Miller de Souza. Inteligência artificial aplicada ao estudo da diversidade genética do Banco de Germoplasma de videira da EMBRAPA Semiárido. 2021. 70 f. Dissertação (Programa de Pós-Graduação em Melhoramento Genético de Plantas) - Universidade Federal Rural de Pernambuco, Recife.
dc.identifier.uri.fl_str_mv http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/9517
identifier_str_mv CALDAS, Raphael Miller de Souza. Inteligência artificial aplicada ao estudo da diversidade genética do Banco de Germoplasma de videira da EMBRAPA Semiárido. 2021. 70 f. Dissertação (Programa de Pós-Graduação em Melhoramento Genético de Plantas) - Universidade Federal Rural de Pernambuco, Recife.
url http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/9517
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dc.publisher.none.fl_str_mv Universidade Federal Rural de Pernambuco
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dc.publisher.initials.fl_str_mv UFRPE
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Departamento de Agronomia
publisher.none.fl_str_mv Universidade Federal Rural de Pernambuco
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