Analytical and numerical comparisons of two methods of estimation of additive × additive interaction of QTL effects
Autor(a) principal: | |
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Data de Publicação: | 2012 |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Scientia Agrícola (Online) |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162012000400002 |
Resumo: | Epistasis (additive × additive interaction) plays an important role in the genetic architecture of complex traits. This study presents analytical and numerical comparisons of two methods of estimation of additive × additive interaction of QTL effects. In the first method, we observed only the plant phenotype, while in the second method we have additional information from the molecular markers observations. In this study, two data sets were analyzed: i) 150 barley (Hordeum vulgare L.) doubled-haploid lines derived from the cross Steptoe × Morex and ii) 145 doubled-haploid lines of barley obtained from the cross Harrington × TR306. In total, 153 sets of observations were analyzed. The additive × additive interaction effect calculated on the basis of the marker observations is smaller than the total additive × additive interaction effect obtained from phenotypic observations only. |
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Analytical and numerical comparisons of two methods of estimation of additive × additive interaction of QTL effectsnonallelic interaction effectdoubled haploid linesquantitative trait lociEpistasis (additive × additive interaction) plays an important role in the genetic architecture of complex traits. This study presents analytical and numerical comparisons of two methods of estimation of additive × additive interaction of QTL effects. In the first method, we observed only the plant phenotype, while in the second method we have additional information from the molecular markers observations. In this study, two data sets were analyzed: i) 150 barley (Hordeum vulgare L.) doubled-haploid lines derived from the cross Steptoe × Morex and ii) 145 doubled-haploid lines of barley obtained from the cross Harrington × TR306. In total, 153 sets of observations were analyzed. The additive × additive interaction effect calculated on the basis of the marker observations is smaller than the total additive × additive interaction effect obtained from phenotypic observations only.Escola Superior de Agricultura "Luiz de Queiroz"2012-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162012000400002Scientia Agricola v.69 n.4 2012reponame:Scientia Agrícola (Online)instname:Universidade de São Paulo (USP)instacron:USP10.1590/S0103-90162012000400002info:eu-repo/semantics/openAccessBocianowski,Janeng2012-03-28T00:00:00Zoai:scielo:S0103-90162012000400002Revistahttp://revistas.usp.br/sa/indexPUBhttps://old.scielo.br/oai/scielo-oai.phpscientia@usp.br||alleoni@usp.br1678-992X0103-9016opendoar:2012-03-28T00:00Scientia Agrícola (Online) - Universidade de São Paulo (USP)false |
dc.title.none.fl_str_mv |
Analytical and numerical comparisons of two methods of estimation of additive × additive interaction of QTL effects |
title |
Analytical and numerical comparisons of two methods of estimation of additive × additive interaction of QTL effects |
spellingShingle |
Analytical and numerical comparisons of two methods of estimation of additive × additive interaction of QTL effects Bocianowski,Jan nonallelic interaction effect doubled haploid lines quantitative trait loci |
title_short |
Analytical and numerical comparisons of two methods of estimation of additive × additive interaction of QTL effects |
title_full |
Analytical and numerical comparisons of two methods of estimation of additive × additive interaction of QTL effects |
title_fullStr |
Analytical and numerical comparisons of two methods of estimation of additive × additive interaction of QTL effects |
title_full_unstemmed |
Analytical and numerical comparisons of two methods of estimation of additive × additive interaction of QTL effects |
title_sort |
Analytical and numerical comparisons of two methods of estimation of additive × additive interaction of QTL effects |
author |
Bocianowski,Jan |
author_facet |
Bocianowski,Jan |
author_role |
author |
dc.contributor.author.fl_str_mv |
Bocianowski,Jan |
dc.subject.por.fl_str_mv |
nonallelic interaction effect doubled haploid lines quantitative trait loci |
topic |
nonallelic interaction effect doubled haploid lines quantitative trait loci |
description |
Epistasis (additive × additive interaction) plays an important role in the genetic architecture of complex traits. This study presents analytical and numerical comparisons of two methods of estimation of additive × additive interaction of QTL effects. In the first method, we observed only the plant phenotype, while in the second method we have additional information from the molecular markers observations. In this study, two data sets were analyzed: i) 150 barley (Hordeum vulgare L.) doubled-haploid lines derived from the cross Steptoe × Morex and ii) 145 doubled-haploid lines of barley obtained from the cross Harrington × TR306. In total, 153 sets of observations were analyzed. The additive × additive interaction effect calculated on the basis of the marker observations is smaller than the total additive × additive interaction effect obtained from phenotypic observations only. |
publishDate |
2012 |
dc.date.none.fl_str_mv |
2012-01-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162012000400002 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162012000400002 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
10.1590/S0103-90162012000400002 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
Escola Superior de Agricultura "Luiz de Queiroz" |
publisher.none.fl_str_mv |
Escola Superior de Agricultura "Luiz de Queiroz" |
dc.source.none.fl_str_mv |
Scientia Agricola v.69 n.4 2012 reponame:Scientia Agrícola (Online) instname:Universidade de São Paulo (USP) instacron:USP |
instname_str |
Universidade de São Paulo (USP) |
instacron_str |
USP |
institution |
USP |
reponame_str |
Scientia Agrícola (Online) |
collection |
Scientia Agrícola (Online) |
repository.name.fl_str_mv |
Scientia Agrícola (Online) - Universidade de São Paulo (USP) |
repository.mail.fl_str_mv |
scientia@usp.br||alleoni@usp.br |
_version_ |
1748936462873657344 |