Morphological and molecular diversity among cassava genotypes

Detalhes bibliográficos
Autor(a) principal: Mezette, Thiago Fonseca
Data de Publicação: 2013
Outros Autores: Blumer, Caroline Groppo, Veasey, Elizabeth Ann
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Pesquisa Agropecuária Brasileira (Online)
Texto Completo: https://seer.sct.embrapa.br/index.php/pab/article/view/14032
Resumo: The objective of this work was to characterize morphologically and molecularly the genetic diversity of cassava accessions, collected from different regions in Brazil. A descriptive analysis was made for 12 morphological traits in 419 accessions. Data was transformed into binary data for cluster analysis and analysis of molecular variance. A higher proportion of white or cream (71%) root cortex color was found, while flesh colors were predominantly white (49%) and cream (42%). Four accession groups were classified by the cluster analysis, but they were not grouped according to their origin, which indicates that diversity is not structured in space. The variation was greater within regions (95.6%). Sixty genotypes were also evaluated using 14 polymorphic microsatellite markers. Molecular results corroborated the morphological ones, showing the same random distribution of genotypes, with no grouping according to origin. Diversity indices were high for each region, and a greater diversity was found within regions, with: a mean number of alleles per locus of 3.530; observed and expected heterozygosity of 0.499 and 0.642, respectively; and Shannon index of 1.03. The absence of spatial structure among cassava genotypes according to their origins shows the anthropic influence in the distribution and movement of germplasm, both within and among regions.
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spelling Morphological and molecular diversity among cassava genotypesDiversidade morfológica e molecular entre genótipos de mandiocaManihot esculenta; genetic diversity; germplasm; microsatellites; morphological traitsManihot esculenta; diversidade genética; germoplasma; microssatélites; caracteres morfológicosThe objective of this work was to characterize morphologically and molecularly the genetic diversity of cassava accessions, collected from different regions in Brazil. A descriptive analysis was made for 12 morphological traits in 419 accessions. Data was transformed into binary data for cluster analysis and analysis of molecular variance. A higher proportion of white or cream (71%) root cortex color was found, while flesh colors were predominantly white (49%) and cream (42%). Four accession groups were classified by the cluster analysis, but they were not grouped according to their origin, which indicates that diversity is not structured in space. The variation was greater within regions (95.6%). Sixty genotypes were also evaluated using 14 polymorphic microsatellite markers. Molecular results corroborated the morphological ones, showing the same random distribution of genotypes, with no grouping according to origin. Diversity indices were high for each region, and a greater diversity was found within regions, with: a mean number of alleles per locus of 3.530; observed and expected heterozygosity of 0.499 and 0.642, respectively; and Shannon index of 1.03. The absence of spatial structure among cassava genotypes according to their origins shows the anthropic influence in the distribution and movement of germplasm, both within and among regions.O objetivo deste trabalho foi caracterizar, morfológica e molecularmente, a diversidade genética de acessos de mandioca de diferentes regiões do Brasil. Realizou-se a análise descritiva de 12 características morfológicas em 419 acessos. Os dados foram transformados em dados binários para análise de agrupamento e análise de variância molecular. Observou-se maior proporção (71%) de cor branca ou creme do córtex da raiz, enquanto as cores da polpa foram predominantemente branca (49%) e creme (42%). Quatro grupos de acessos foram classificados pela análise de agrupamento, mas não foram agrupados de acordo com sua origem, o que indica que a diversidade não está estruturada no espaço. A maior parte da variação ocorreu dentro das populações (95,6%). Sessenta genótipos também foram avaliados com o uso de 14 marcadores microssatélites polimórficos. Os resultados moleculares corroboraram os morfológicos e mostraram a mesma distribuição aleatória dos genótipos, com ausência de agrupamento quanto ao local de origem. Os índices de diversidade foram elevados para cada região e a maior parte da diversidade foi observada dentro de regiões, com: número médio de alelos por loco de 3,530; heterozigosidade média observada de 0,499 e esperada de 0,642; e índice de Shannon de 1,03. A ausência de estrutura espacial entre os genótipos de mandioca de acordo com suas origens mostra a influência antrópica na distribuição e movimentação de germoplasma, tanto entre como dentro de regiões.Pesquisa Agropecuaria BrasileiraPesquisa Agropecuária BrasileiraFAPESPMezette, Thiago FonsecaBlumer, Caroline GroppoVeasey, Elizabeth Ann2013-07-31info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://seer.sct.embrapa.br/index.php/pab/article/view/14032Pesquisa Agropecuaria Brasileira; v.48, n.5, maio 2013; 510-518Pesquisa Agropecuária Brasileira; v.48, n.5, maio 2013; 510-5181678-39210100-104xreponame:Pesquisa Agropecuária Brasileira (Online)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPAenghttps://seer.sct.embrapa.br/index.php/pab/article/view/14032/11775https://seer.sct.embrapa.br/index.php/pab/article/downloadSuppFile/14032/9421https://seer.sct.embrapa.br/index.php/pab/article/downloadSuppFile/14032/9422https://seer.sct.embrapa.br/index.php/pab/article/downloadSuppFile/14032/9423https://seer.sct.embrapa.br/index.php/pab/article/downloadSuppFile/14032/9424https://seer.sct.embrapa.br/index.php/pab/article/downloadSuppFile/14032/9425info:eu-repo/semantics/openAccess2013-07-31T20:58:44Zoai:ojs.seer.sct.embrapa.br:article/14032Revistahttp://seer.sct.embrapa.br/index.php/pabPRIhttps://old.scielo.br/oai/scielo-oai.phppab@sct.embrapa.br || sct.pab@embrapa.br1678-39210100-204Xopendoar:2013-07-31T20:58:44Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Morphological and molecular diversity among cassava genotypes
Diversidade morfológica e molecular entre genótipos de mandioca
title Morphological and molecular diversity among cassava genotypes
spellingShingle Morphological and molecular diversity among cassava genotypes
Mezette, Thiago Fonseca
Manihot esculenta; genetic diversity; germplasm; microsatellites; morphological traits
Manihot esculenta; diversidade genética; germoplasma; microssatélites; caracteres morfológicos
title_short Morphological and molecular diversity among cassava genotypes
title_full Morphological and molecular diversity among cassava genotypes
title_fullStr Morphological and molecular diversity among cassava genotypes
title_full_unstemmed Morphological and molecular diversity among cassava genotypes
title_sort Morphological and molecular diversity among cassava genotypes
author Mezette, Thiago Fonseca
author_facet Mezette, Thiago Fonseca
Blumer, Caroline Groppo
Veasey, Elizabeth Ann
author_role author
author2 Blumer, Caroline Groppo
Veasey, Elizabeth Ann
author2_role author
author
dc.contributor.none.fl_str_mv FAPESP

dc.contributor.author.fl_str_mv Mezette, Thiago Fonseca
Blumer, Caroline Groppo
Veasey, Elizabeth Ann
dc.subject.por.fl_str_mv Manihot esculenta; genetic diversity; germplasm; microsatellites; morphological traits
Manihot esculenta; diversidade genética; germoplasma; microssatélites; caracteres morfológicos
topic Manihot esculenta; genetic diversity; germplasm; microsatellites; morphological traits
Manihot esculenta; diversidade genética; germoplasma; microssatélites; caracteres morfológicos
description The objective of this work was to characterize morphologically and molecularly the genetic diversity of cassava accessions, collected from different regions in Brazil. A descriptive analysis was made for 12 morphological traits in 419 accessions. Data was transformed into binary data for cluster analysis and analysis of molecular variance. A higher proportion of white or cream (71%) root cortex color was found, while flesh colors were predominantly white (49%) and cream (42%). Four accession groups were classified by the cluster analysis, but they were not grouped according to their origin, which indicates that diversity is not structured in space. The variation was greater within regions (95.6%). Sixty genotypes were also evaluated using 14 polymorphic microsatellite markers. Molecular results corroborated the morphological ones, showing the same random distribution of genotypes, with no grouping according to origin. Diversity indices were high for each region, and a greater diversity was found within regions, with: a mean number of alleles per locus of 3.530; observed and expected heterozygosity of 0.499 and 0.642, respectively; and Shannon index of 1.03. The absence of spatial structure among cassava genotypes according to their origins shows the anthropic influence in the distribution and movement of germplasm, both within and among regions.
publishDate 2013
dc.date.none.fl_str_mv 2013-07-31
dc.type.none.fl_str_mv
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url https://seer.sct.embrapa.br/index.php/pab/article/view/14032
dc.language.iso.fl_str_mv eng
language eng
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dc.publisher.none.fl_str_mv Pesquisa Agropecuaria Brasileira
Pesquisa Agropecuária Brasileira
publisher.none.fl_str_mv Pesquisa Agropecuaria Brasileira
Pesquisa Agropecuária Brasileira
dc.source.none.fl_str_mv Pesquisa Agropecuaria Brasileira; v.48, n.5, maio 2013; 510-518
Pesquisa Agropecuária Brasileira; v.48, n.5, maio 2013; 510-518
1678-3921
0100-104x
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repository.name.fl_str_mv Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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