Polymorphic information content of SSR markers for Coffea spp.

Detalhes bibliográficos
Autor(a) principal: MISSIO, R. F.
Data de Publicação: 2010
Outros Autores: CAIXETA, E. T., ZAMBOLIM, E. M., CRUZ, C. D., SAKIYAMA, N. S.
Tipo de documento: Artigo
Idioma: por
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/880497
Resumo: Thirty-three coffee SSR primers from enriched genomic library with (GT)15 and (AGG)10 repeats were analyzed in 24 coffee tree accessions. Twenty-two primers were polymorphic among accessions; the number of alleles ranged from 2 to 13, with the mean number of 5.1 alleles per primer. PIC values ranged from 0.08 to 0.79. The highest mean PIC values were found for C. canephora (0.46), and the lowest values for C. arabica (0.22) and triploids (0.22) accessions. The polymorphic SSR markers used in this study were useful for genetic fingerprinting in the coffee tree, especially in the C. canephora and the leaf rust resistant arabica cultivars.
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spelling Polymorphic information content of SSR markers for Coffea spp.SSRArabica coffeeGenomic DNA libraries enrichedMolecular mrkersThirty-three coffee SSR primers from enriched genomic library with (GT)15 and (AGG)10 repeats were analyzed in 24 coffee tree accessions. Twenty-two primers were polymorphic among accessions; the number of alleles ranged from 2 to 13, with the mean number of 5.1 alleles per primer. PIC values ranged from 0.08 to 0.79. The highest mean PIC values were found for C. canephora (0.46), and the lowest values for C. arabica (0.22) and triploids (0.22) accessions. The polymorphic SSR markers used in this study were useful for genetic fingerprinting in the coffee tree, especially in the C. canephora and the leaf rust resistant arabica cultivars.ROBSON FERNANDO MISSIO, Universidade Federal do Paraná; EVELINE TEIXEIRA CAIXETA, SAPC; EUNIZE MACIEL ZAMBOLIM, Universidade Federal do Paraná; COSME DAMIÃO CRUZ, Universidade Federal de Viçosa; NEY SUSSUMU SAKIYAMA, Universidade Federal de Viçosa.MISSIO, R. F.CAIXETA, E. T.ZAMBOLIM, E. M.CRUZ, C. D.SAKIYAMA, N. S.2011-04-10T11:11:11Z2011-04-10T11:11:11Z2011-03-1120102011-07-07T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article89-94CROP BREEDING AND APPLIED BIOTECHNOLOGY, v. 10, n. 1, p. 89-94. 2010.http://www.alice.cnptia.embrapa.br/alice/handle/doc/880497porinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-15T22:20:56Zoai:www.alice.cnptia.embrapa.br:doc/880497Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-15T22:20:56falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-15T22:20:56Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Polymorphic information content of SSR markers for Coffea spp.
title Polymorphic information content of SSR markers for Coffea spp.
spellingShingle Polymorphic information content of SSR markers for Coffea spp.
MISSIO, R. F.
SSR
Arabica coffee
Genomic DNA libraries enriched
Molecular mrkers
title_short Polymorphic information content of SSR markers for Coffea spp.
title_full Polymorphic information content of SSR markers for Coffea spp.
title_fullStr Polymorphic information content of SSR markers for Coffea spp.
title_full_unstemmed Polymorphic information content of SSR markers for Coffea spp.
title_sort Polymorphic information content of SSR markers for Coffea spp.
author MISSIO, R. F.
author_facet MISSIO, R. F.
CAIXETA, E. T.
ZAMBOLIM, E. M.
CRUZ, C. D.
SAKIYAMA, N. S.
author_role author
author2 CAIXETA, E. T.
ZAMBOLIM, E. M.
CRUZ, C. D.
SAKIYAMA, N. S.
author2_role author
author
author
author
dc.contributor.none.fl_str_mv ROBSON FERNANDO MISSIO, Universidade Federal do Paraná; EVELINE TEIXEIRA CAIXETA, SAPC; EUNIZE MACIEL ZAMBOLIM, Universidade Federal do Paraná; COSME DAMIÃO CRUZ, Universidade Federal de Viçosa; NEY SUSSUMU SAKIYAMA, Universidade Federal de Viçosa.
dc.contributor.author.fl_str_mv MISSIO, R. F.
CAIXETA, E. T.
ZAMBOLIM, E. M.
CRUZ, C. D.
SAKIYAMA, N. S.
dc.subject.por.fl_str_mv SSR
Arabica coffee
Genomic DNA libraries enriched
Molecular mrkers
topic SSR
Arabica coffee
Genomic DNA libraries enriched
Molecular mrkers
description Thirty-three coffee SSR primers from enriched genomic library with (GT)15 and (AGG)10 repeats were analyzed in 24 coffee tree accessions. Twenty-two primers were polymorphic among accessions; the number of alleles ranged from 2 to 13, with the mean number of 5.1 alleles per primer. PIC values ranged from 0.08 to 0.79. The highest mean PIC values were found for C. canephora (0.46), and the lowest values for C. arabica (0.22) and triploids (0.22) accessions. The polymorphic SSR markers used in this study were useful for genetic fingerprinting in the coffee tree, especially in the C. canephora and the leaf rust resistant arabica cultivars.
publishDate 2010
dc.date.none.fl_str_mv 2010
2011-04-10T11:11:11Z
2011-04-10T11:11:11Z
2011-03-11
2011-07-07T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv CROP BREEDING AND APPLIED BIOTECHNOLOGY, v. 10, n. 1, p. 89-94. 2010.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/880497
identifier_str_mv CROP BREEDING AND APPLIED BIOTECHNOLOGY, v. 10, n. 1, p. 89-94. 2010.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/880497
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 89-94
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
_version_ 1794503340810305536

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