Low-copy genes in terpenoid metabolism: the evolution and expression of MVK and DXR genes in angiosperms.

Detalhes bibliográficos
Autor(a) principal: SILVA, N.
Data de Publicação: 2020
Outros Autores: IVAMOTO-SUZUKI, S. T., CAMARGO, P. O., ROSA, R. S., PEREIRA, L. F. P., DOMINGUES, D. S.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1139300
https://doi.org/10.3390/plants9040525
Resumo: Terpenoids are a diverse class of metabolites that impact plant metabolism in response to environmental cues. They are synthesized either via a predominantly cytosolic (MVA) pathway or a plastidic pathway (MEP). In Arabidopsis, several enzymes from the MVA and MEP pathways are encoded by gene families, excluding MVK and DXR, which are single-copy genes. In this study, we assess the diversity, evolution and expression of DXR and MVK genes in selected angiosperms and Coffea arabica in particular. Evolutionary analysis revealed that DXR and MVK underwent purifying selection, but the selection effect for DXR was stronger than it was for MVK. Digital gene expression (DGE) profile analysis of six species revealed that expression levels of MVK in flowers and roots were high, whereas for DXR peak values were observed in leaves. In C. arabica, both genes were highly expressed in flowers, and CaDXR was upregulated in response to methyl jasmonate. C. arabica DGE data were validated by assessing gene expression in selected organs, and by plants treated with hexanoic acid (Hx) using RT-qPCR. MVK expression was upregulated in roots treated with Hx. CaDXR was downregulated in leaves by Hx treatment in a genotype-specific manner, indicating a differential response to priming.
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spelling Low-copy genes in terpenoid metabolism: the evolution and expression of MVK and DXR genes in angiosperms.GenesTerpenoidsAngiospermaeCoffea arabica var. arabicaTerpenoids are a diverse class of metabolites that impact plant metabolism in response to environmental cues. They are synthesized either via a predominantly cytosolic (MVA) pathway or a plastidic pathway (MEP). In Arabidopsis, several enzymes from the MVA and MEP pathways are encoded by gene families, excluding MVK and DXR, which are single-copy genes. In this study, we assess the diversity, evolution and expression of DXR and MVK genes in selected angiosperms and Coffea arabica in particular. Evolutionary analysis revealed that DXR and MVK underwent purifying selection, but the selection effect for DXR was stronger than it was for MVK. Digital gene expression (DGE) profile analysis of six species revealed that expression levels of MVK in flowers and roots were high, whereas for DXR peak values were observed in leaves. In C. arabica, both genes were highly expressed in flowers, and CaDXR was upregulated in response to methyl jasmonate. C. arabica DGE data were validated by assessing gene expression in selected organs, and by plants treated with hexanoic acid (Hx) using RT-qPCR. MVK expression was upregulated in roots treated with Hx. CaDXR was downregulated in leaves by Hx treatment in a genotype-specific manner, indicating a differential response to priming.NATACHA SILVA, UNESP; SUZANA TIEMI IVAMOTO-SUZUKI, UNESP; PAULA OLIVEIRA CAMARGO, UNESP; RAÍSSA SCALZONI ROSA, UNESP; LUIZ FILIPE PROTASIO PEREIRA, CNPCa; DOUGLAS SILVA DOMINGUES, UNESP.SILVA, N.IVAMOTO-SUZUKI, S. T.CAMARGO, P. O.ROSA, R. S.PEREIRA, L. F. P.DOMINGUES, D. S.2022-01-25T16:00:43Z2022-01-25T16:00:43Z2022-01-252020info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlePlants, v. 9, n. 4, 2020.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1139300https://doi.org/10.3390/plants9040525enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2022-01-25T16:00:52Zoai:www.alice.cnptia.embrapa.br:doc/1139300Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542022-01-25T16:00:52falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542022-01-25T16:00:52Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Low-copy genes in terpenoid metabolism: the evolution and expression of MVK and DXR genes in angiosperms.
title Low-copy genes in terpenoid metabolism: the evolution and expression of MVK and DXR genes in angiosperms.
spellingShingle Low-copy genes in terpenoid metabolism: the evolution and expression of MVK and DXR genes in angiosperms.
SILVA, N.
Genes
Terpenoids
Angiospermae
Coffea arabica var. arabica
title_short Low-copy genes in terpenoid metabolism: the evolution and expression of MVK and DXR genes in angiosperms.
title_full Low-copy genes in terpenoid metabolism: the evolution and expression of MVK and DXR genes in angiosperms.
title_fullStr Low-copy genes in terpenoid metabolism: the evolution and expression of MVK and DXR genes in angiosperms.
title_full_unstemmed Low-copy genes in terpenoid metabolism: the evolution and expression of MVK and DXR genes in angiosperms.
title_sort Low-copy genes in terpenoid metabolism: the evolution and expression of MVK and DXR genes in angiosperms.
author SILVA, N.
author_facet SILVA, N.
IVAMOTO-SUZUKI, S. T.
CAMARGO, P. O.
ROSA, R. S.
PEREIRA, L. F. P.
DOMINGUES, D. S.
author_role author
author2 IVAMOTO-SUZUKI, S. T.
CAMARGO, P. O.
ROSA, R. S.
PEREIRA, L. F. P.
DOMINGUES, D. S.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv NATACHA SILVA, UNESP; SUZANA TIEMI IVAMOTO-SUZUKI, UNESP; PAULA OLIVEIRA CAMARGO, UNESP; RAÍSSA SCALZONI ROSA, UNESP; LUIZ FILIPE PROTASIO PEREIRA, CNPCa; DOUGLAS SILVA DOMINGUES, UNESP.
dc.contributor.author.fl_str_mv SILVA, N.
IVAMOTO-SUZUKI, S. T.
CAMARGO, P. O.
ROSA, R. S.
PEREIRA, L. F. P.
DOMINGUES, D. S.
dc.subject.por.fl_str_mv Genes
Terpenoids
Angiospermae
Coffea arabica var. arabica
topic Genes
Terpenoids
Angiospermae
Coffea arabica var. arabica
description Terpenoids are a diverse class of metabolites that impact plant metabolism in response to environmental cues. They are synthesized either via a predominantly cytosolic (MVA) pathway or a plastidic pathway (MEP). In Arabidopsis, several enzymes from the MVA and MEP pathways are encoded by gene families, excluding MVK and DXR, which are single-copy genes. In this study, we assess the diversity, evolution and expression of DXR and MVK genes in selected angiosperms and Coffea arabica in particular. Evolutionary analysis revealed that DXR and MVK underwent purifying selection, but the selection effect for DXR was stronger than it was for MVK. Digital gene expression (DGE) profile analysis of six species revealed that expression levels of MVK in flowers and roots were high, whereas for DXR peak values were observed in leaves. In C. arabica, both genes were highly expressed in flowers, and CaDXR was upregulated in response to methyl jasmonate. C. arabica DGE data were validated by assessing gene expression in selected organs, and by plants treated with hexanoic acid (Hx) using RT-qPCR. MVK expression was upregulated in roots treated with Hx. CaDXR was downregulated in leaves by Hx treatment in a genotype-specific manner, indicating a differential response to priming.
publishDate 2020
dc.date.none.fl_str_mv 2020
2022-01-25T16:00:43Z
2022-01-25T16:00:43Z
2022-01-25
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
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status_str publishedVersion
dc.identifier.uri.fl_str_mv Plants, v. 9, n. 4, 2020.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1139300
https://doi.org/10.3390/plants9040525
identifier_str_mv Plants, v. 9, n. 4, 2020.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1139300
https://doi.org/10.3390/plants9040525
dc.language.iso.fl_str_mv eng
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dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
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