Classification of apple and pear species from Alcobaça region (Portugal) and their cultivars with machine learning algorithms

Detalhes bibliográficos
Autor(a) principal: Teixeira, João David
Data de Publicação: 2023
Outros Autores: Sánchez, Cláudia, Almeida, Carina, Sanches-Silva, Ana, Parpot, Pier
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: https://hdl.handle.net/1822/83948
Resumo: Principal Component Analysis (PCA) transforms the original variable into new ones called principal components (PC). These PC´s are calculated attributing a coefficient for each original variables proportional to their contribution into this transformation in order to maximize the variances of the first few components [1]. The main objective is to reduce the dimensionality, while keeping the contribution of all initial variables in order to provide a visual pattern recognition [2]. PCA biplot graphs with both scores and loadings provide information on the influence of each variable on a given sample. The hierarchical clustering was also employed in order to highlight the similarities among samples. The following variables were determined through ethanolic extracts of apple and pear varieties from the Alcobaça region (Portugal) using spectrophotometric analysis: DPPH radical scavenging, -carotene bleaching, total phenolic content, total flavonoid content, and fructose content. The results show that a very high correlation exists among the variables antioxidant capacity through DPPH, total phenolics content and total flavonoids, while the fructose content shows independent behavior in relation to the other ones. The graph of scores for the first two PCs, which explain 90% of variance, shows three different clusters with different apple and pear species. It can be concluded from these results that the fructose content allows to separate apples and pears while antioxidant capacity through DPPH, total phenolics content and total flavonoids content can be used to separate different cultivars of each fruit. This study shows that multivariate analysis, with special focus on PCA, can be a valuable tool for the separation of different fruit species and their cultivars highlighting the similarities and differences among them.
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spelling Classification of apple and pear species from Alcobaça region (Portugal) and their cultivars with machine learning algorithmsPrincipal Component Analysis (PCA) transforms the original variable into new ones called principal components (PC). These PC´s are calculated attributing a coefficient for each original variables proportional to their contribution into this transformation in order to maximize the variances of the first few components [1]. The main objective is to reduce the dimensionality, while keeping the contribution of all initial variables in order to provide a visual pattern recognition [2]. PCA biplot graphs with both scores and loadings provide information on the influence of each variable on a given sample. The hierarchical clustering was also employed in order to highlight the similarities among samples. The following variables were determined through ethanolic extracts of apple and pear varieties from the Alcobaça region (Portugal) using spectrophotometric analysis: DPPH radical scavenging, -carotene bleaching, total phenolic content, total flavonoid content, and fructose content. The results show that a very high correlation exists among the variables antioxidant capacity through DPPH, total phenolics content and total flavonoids, while the fructose content shows independent behavior in relation to the other ones. The graph of scores for the first two PCs, which explain 90% of variance, shows three different clusters with different apple and pear species. It can be concluded from these results that the fructose content allows to separate apples and pears while antioxidant capacity through DPPH, total phenolics content and total flavonoids content can be used to separate different cultivars of each fruit. This study shows that multivariate analysis, with special focus on PCA, can be a valuable tool for the separation of different fruit species and their cultivars highlighting the similarities and differences among them.This study was carried out in the frame of the clabel+ project: Innovative Natural, Nutritious and Consumer Oriented “Clean Label” Foods with the reference POCI-01-0247-FEDER-046080 financed by the Competitiveness and Internationalization Thematic Operational Programme (PO CI), under the COMPETE2020, PORTUGAL2020 Partnership Agreement, through the co-financing of European Regional Development Fund (FEDER). J. D. Teixeira would like to thank to clabel+ project for his fellowship (28/2021/BI). The authors thank Patricia Vicente for her support in the field work. The work was supported by UIDB/00211/2020 with funding from FCT/MCTES through national funds. C. Almeida also acknowledges the financial support by LA/P/0045/2020 (ALiCE), UIDB/00511/2020 and UIDP/00511/2020 (LEPABE), funded by national funds through FCT/MCTES (PIDDAC).info:eu-repo/semantics/publishedVersionUniversidade do MinhoTeixeira, João DavidSánchez, CláudiaAlmeida, CarinaSanches-Silva, AnaParpot, Pier2023-03-212023-03-21T00:00:00Zconference objectinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://hdl.handle.net/1822/83948engTeixeira, João David; Sánchez, Cláudia; Almeida, Carina; Sanches-Silva, Ana; Parpot, Pier, Classification of apple and pear species from Alcobaça region (Portugal) and their cultivars with machine learning algorithms. Dare2Change - Innovation-Driven Agrifood Business. No. S&BE 29, Porto, Portugal, March 21, 169-170, 2023.https://dare2change.pt/info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-05-11T07:01:54Zoai:repositorium.sdum.uminho.pt:1822/83948Portal AgregadorONGhttps://www.rcaap.pt/oai/openairemluisa.alvim@gmail.comopendoar:71602024-05-11T07:01:54Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Classification of apple and pear species from Alcobaça region (Portugal) and their cultivars with machine learning algorithms
title Classification of apple and pear species from Alcobaça region (Portugal) and their cultivars with machine learning algorithms
spellingShingle Classification of apple and pear species from Alcobaça region (Portugal) and their cultivars with machine learning algorithms
Teixeira, João David
title_short Classification of apple and pear species from Alcobaça region (Portugal) and their cultivars with machine learning algorithms
title_full Classification of apple and pear species from Alcobaça region (Portugal) and their cultivars with machine learning algorithms
title_fullStr Classification of apple and pear species from Alcobaça region (Portugal) and their cultivars with machine learning algorithms
title_full_unstemmed Classification of apple and pear species from Alcobaça region (Portugal) and their cultivars with machine learning algorithms
title_sort Classification of apple and pear species from Alcobaça region (Portugal) and their cultivars with machine learning algorithms
author Teixeira, João David
author_facet Teixeira, João David
Sánchez, Cláudia
Almeida, Carina
Sanches-Silva, Ana
Parpot, Pier
author_role author
author2 Sánchez, Cláudia
Almeida, Carina
Sanches-Silva, Ana
Parpot, Pier
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Teixeira, João David
Sánchez, Cláudia
Almeida, Carina
Sanches-Silva, Ana
Parpot, Pier
description Principal Component Analysis (PCA) transforms the original variable into new ones called principal components (PC). These PC´s are calculated attributing a coefficient for each original variables proportional to their contribution into this transformation in order to maximize the variances of the first few components [1]. The main objective is to reduce the dimensionality, while keeping the contribution of all initial variables in order to provide a visual pattern recognition [2]. PCA biplot graphs with both scores and loadings provide information on the influence of each variable on a given sample. The hierarchical clustering was also employed in order to highlight the similarities among samples. The following variables were determined through ethanolic extracts of apple and pear varieties from the Alcobaça region (Portugal) using spectrophotometric analysis: DPPH radical scavenging, -carotene bleaching, total phenolic content, total flavonoid content, and fructose content. The results show that a very high correlation exists among the variables antioxidant capacity through DPPH, total phenolics content and total flavonoids, while the fructose content shows independent behavior in relation to the other ones. The graph of scores for the first two PCs, which explain 90% of variance, shows three different clusters with different apple and pear species. It can be concluded from these results that the fructose content allows to separate apples and pears while antioxidant capacity through DPPH, total phenolics content and total flavonoids content can be used to separate different cultivars of each fruit. This study shows that multivariate analysis, with special focus on PCA, can be a valuable tool for the separation of different fruit species and their cultivars highlighting the similarities and differences among them.
publishDate 2023
dc.date.none.fl_str_mv 2023-03-21
2023-03-21T00:00:00Z
dc.type.driver.fl_str_mv conference object
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://hdl.handle.net/1822/83948
url https://hdl.handle.net/1822/83948
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Teixeira, João David; Sánchez, Cláudia; Almeida, Carina; Sanches-Silva, Ana; Parpot, Pier, Classification of apple and pear species from Alcobaça region (Portugal) and their cultivars with machine learning algorithms. Dare2Change - Innovation-Driven Agrifood Business. No. S&BE 29, Porto, Portugal, March 21, 169-170, 2023.
https://dare2change.pt/
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
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dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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