In situ near infrared spectroscopy monitoring of cyprosin production by recombinant Saccharomyces cerevisiae strains

Detalhes bibliográficos
Autor(a) principal: Sampaio, Pedro
Data de Publicação: 2014
Outros Autores: Sales, Kevin C., Rosa, Filipa O., Lopes, Marta B., Calado, Cecília
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.21/12133
Resumo: Near infrared (NIR) spectroscopy was used to in situ monitoring the cultivation of two recombinant Saccharomyces cerevisiae strains producing heterologous cyprosin B. NIR spectroscopy is a fast and non-destructive technique, that by being based on overtones and combinations of molecular vibrations requires chemometrics tools, such as partial least squares (PLS) regression models, to extract quantitative information concerning the variables of interest from the spectral data. In the present work, good PLS calibration models based on specific regions of the NIR spectral data were built for estimating the critical variables of the cyprosin production process: biomass concentration, cyprosin activity, cyprosin specific activity, the carbon sources glucose and galactose concentration and the by-products acetic acid and ethanol concentration. The PLS models developed are valid for both recombinant S. cerevisiae strains, presenting distinct cyprosin production capacities, and therefore can be used, not only for the real-time control of both processes, but also in optimization protocols. The PLS model for biomass yielded a R2 = 0.98 and a RMSEP = 0.46 g dcw l−1, representing an error of 4% for a calibration range between 0.44 and 13.75 g dcw l−1. A R2 = 0.94 and a RMSEP = 167 U ml−1 were obtained for the cyprosin activity, corresponding to an error of 6.7% of the experimental data range (0–2509 U ml−1), whereas a R2 = 0.93 and RMSEP = 672 U mg−1 were obtained for the cyprosin specific activity, corresponding to an error of 7% of the experimental data range (0–11,690 U mg−1). For the carbon sources glucose and galactose, a R2 = 0.96 and a RMSECV of 1.26 and 0.55 g l−1, respectively, were obtained, showing high predictive capabilities within the range of 0–20 g l−1. For the metabolites resulting from the cell growth, the PLS model for acetate was characterized by a R2 = 0.92 and a RMSEP = 0.06 g l−1, which corresponds to a 6.1% error within the range of 0.41–1.23 g l−1; for the ethanol, a high accuracy PLS model with a R2 = 0.97 and a RMSEP = 1.08 g l−1 was obtained, representing an error of 9% within the range of 0.18–21.76 g l−1. The present study shows that it is possible the in situ monitoring and prediction of the critical variables of the recombinant cyprosin B production process by NIR spectroscopy, which can be applied in process control in real-time and in optimization protocols. From the above, NIR spectroscopy appears as a valuable analytical tool for online monitoring of cultivation processes, in a fast, accurate and reproducible operation mode.
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spelling In situ near infrared spectroscopy monitoring of cyprosin production by recombinant Saccharomyces cerevisiae strainsIn situ monitoringNear infraredPartial least squares regressionRecombinant cyprosin BSaccharomyces cerevisiaeNear infrared (NIR) spectroscopy was used to in situ monitoring the cultivation of two recombinant Saccharomyces cerevisiae strains producing heterologous cyprosin B. NIR spectroscopy is a fast and non-destructive technique, that by being based on overtones and combinations of molecular vibrations requires chemometrics tools, such as partial least squares (PLS) regression models, to extract quantitative information concerning the variables of interest from the spectral data. In the present work, good PLS calibration models based on specific regions of the NIR spectral data were built for estimating the critical variables of the cyprosin production process: biomass concentration, cyprosin activity, cyprosin specific activity, the carbon sources glucose and galactose concentration and the by-products acetic acid and ethanol concentration. The PLS models developed are valid for both recombinant S. cerevisiae strains, presenting distinct cyprosin production capacities, and therefore can be used, not only for the real-time control of both processes, but also in optimization protocols. The PLS model for biomass yielded a R2 = 0.98 and a RMSEP = 0.46 g dcw l−1, representing an error of 4% for a calibration range between 0.44 and 13.75 g dcw l−1. A R2 = 0.94 and a RMSEP = 167 U ml−1 were obtained for the cyprosin activity, corresponding to an error of 6.7% of the experimental data range (0–2509 U ml−1), whereas a R2 = 0.93 and RMSEP = 672 U mg−1 were obtained for the cyprosin specific activity, corresponding to an error of 7% of the experimental data range (0–11,690 U mg−1). For the carbon sources glucose and galactose, a R2 = 0.96 and a RMSECV of 1.26 and 0.55 g l−1, respectively, were obtained, showing high predictive capabilities within the range of 0–20 g l−1. For the metabolites resulting from the cell growth, the PLS model for acetate was characterized by a R2 = 0.92 and a RMSEP = 0.06 g l−1, which corresponds to a 6.1% error within the range of 0.41–1.23 g l−1; for the ethanol, a high accuracy PLS model with a R2 = 0.97 and a RMSEP = 1.08 g l−1 was obtained, representing an error of 9% within the range of 0.18–21.76 g l−1. The present study shows that it is possible the in situ monitoring and prediction of the critical variables of the recombinant cyprosin B production process by NIR spectroscopy, which can be applied in process control in real-time and in optimization protocols. From the above, NIR spectroscopy appears as a valuable analytical tool for online monitoring of cultivation processes, in a fast, accurate and reproducible operation mode.ElsevierRCIPLSampaio, PedroSales, Kevin C.Rosa, Filipa O.Lopes, Marta B.Calado, Cecília2020-07-31T16:57:42Z2014-10-202014-10-20T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.21/12133engSAMPAIO, Pedro N.; [et al] – In situ near infrared spectroscopy monitoring of cyprosin production by recombinant Saccharomyces cerevisiae strains. Journal of Biotechnology. ISSN 0168-1656. Vol. 188 (2014), pp. 148-1570168-165610.1016/j.jbiotec.2014.07.454metadata only accessinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-08-03T10:04:29Zoai:repositorio.ipl.pt:10400.21/12133Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T20:20:17.133394Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv In situ near infrared spectroscopy monitoring of cyprosin production by recombinant Saccharomyces cerevisiae strains
title In situ near infrared spectroscopy monitoring of cyprosin production by recombinant Saccharomyces cerevisiae strains
spellingShingle In situ near infrared spectroscopy monitoring of cyprosin production by recombinant Saccharomyces cerevisiae strains
Sampaio, Pedro
In situ monitoring
Near infrared
Partial least squares regression
Recombinant cyprosin B
Saccharomyces cerevisiae
title_short In situ near infrared spectroscopy monitoring of cyprosin production by recombinant Saccharomyces cerevisiae strains
title_full In situ near infrared spectroscopy monitoring of cyprosin production by recombinant Saccharomyces cerevisiae strains
title_fullStr In situ near infrared spectroscopy monitoring of cyprosin production by recombinant Saccharomyces cerevisiae strains
title_full_unstemmed In situ near infrared spectroscopy monitoring of cyprosin production by recombinant Saccharomyces cerevisiae strains
title_sort In situ near infrared spectroscopy monitoring of cyprosin production by recombinant Saccharomyces cerevisiae strains
author Sampaio, Pedro
author_facet Sampaio, Pedro
Sales, Kevin C.
Rosa, Filipa O.
Lopes, Marta B.
Calado, Cecília
author_role author
author2 Sales, Kevin C.
Rosa, Filipa O.
Lopes, Marta B.
Calado, Cecília
author2_role author
author
author
author
dc.contributor.none.fl_str_mv RCIPL
dc.contributor.author.fl_str_mv Sampaio, Pedro
Sales, Kevin C.
Rosa, Filipa O.
Lopes, Marta B.
Calado, Cecília
dc.subject.por.fl_str_mv In situ monitoring
Near infrared
Partial least squares regression
Recombinant cyprosin B
Saccharomyces cerevisiae
topic In situ monitoring
Near infrared
Partial least squares regression
Recombinant cyprosin B
Saccharomyces cerevisiae
description Near infrared (NIR) spectroscopy was used to in situ monitoring the cultivation of two recombinant Saccharomyces cerevisiae strains producing heterologous cyprosin B. NIR spectroscopy is a fast and non-destructive technique, that by being based on overtones and combinations of molecular vibrations requires chemometrics tools, such as partial least squares (PLS) regression models, to extract quantitative information concerning the variables of interest from the spectral data. In the present work, good PLS calibration models based on specific regions of the NIR spectral data were built for estimating the critical variables of the cyprosin production process: biomass concentration, cyprosin activity, cyprosin specific activity, the carbon sources glucose and galactose concentration and the by-products acetic acid and ethanol concentration. The PLS models developed are valid for both recombinant S. cerevisiae strains, presenting distinct cyprosin production capacities, and therefore can be used, not only for the real-time control of both processes, but also in optimization protocols. The PLS model for biomass yielded a R2 = 0.98 and a RMSEP = 0.46 g dcw l−1, representing an error of 4% for a calibration range between 0.44 and 13.75 g dcw l−1. A R2 = 0.94 and a RMSEP = 167 U ml−1 were obtained for the cyprosin activity, corresponding to an error of 6.7% of the experimental data range (0–2509 U ml−1), whereas a R2 = 0.93 and RMSEP = 672 U mg−1 were obtained for the cyprosin specific activity, corresponding to an error of 7% of the experimental data range (0–11,690 U mg−1). For the carbon sources glucose and galactose, a R2 = 0.96 and a RMSECV of 1.26 and 0.55 g l−1, respectively, were obtained, showing high predictive capabilities within the range of 0–20 g l−1. For the metabolites resulting from the cell growth, the PLS model for acetate was characterized by a R2 = 0.92 and a RMSEP = 0.06 g l−1, which corresponds to a 6.1% error within the range of 0.41–1.23 g l−1; for the ethanol, a high accuracy PLS model with a R2 = 0.97 and a RMSEP = 1.08 g l−1 was obtained, representing an error of 9% within the range of 0.18–21.76 g l−1. The present study shows that it is possible the in situ monitoring and prediction of the critical variables of the recombinant cyprosin B production process by NIR spectroscopy, which can be applied in process control in real-time and in optimization protocols. From the above, NIR spectroscopy appears as a valuable analytical tool for online monitoring of cultivation processes, in a fast, accurate and reproducible operation mode.
publishDate 2014
dc.date.none.fl_str_mv 2014-10-20
2014-10-20T00:00:00Z
2020-07-31T16:57:42Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.21/12133
url http://hdl.handle.net/10400.21/12133
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv SAMPAIO, Pedro N.; [et al] – In situ near infrared spectroscopy monitoring of cyprosin production by recombinant Saccharomyces cerevisiae strains. Journal of Biotechnology. ISSN 0168-1656. Vol. 188 (2014), pp. 148-157
0168-1656
10.1016/j.jbiotec.2014.07.454
dc.rights.driver.fl_str_mv metadata only access
info:eu-repo/semantics/openAccess
rights_invalid_str_mv metadata only access
eu_rights_str_mv openAccess
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dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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