Four principles to establish a universal virus taxonomy
| Autor(a) principal: | |
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| Data de Publicação: | 2023 |
| Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| Tipo de documento: | Artigo |
| Idioma: | eng |
| Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
| Texto Completo: | http://hdl.handle.net/10362/155299 |
Resumo: | 1759874.Y.B.wassupportedbythe ProfessionalAssociationoftheAllianceof Publisher Copyright: Copyright: This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication. |
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Four principles to establish a universal virus taxonomyuniversal virus taxonomyprinciplesQR355 VirologyR MedicineNeuroscience(all)Biochemistry, Genetics and Molecular Biology(all)Immunology and Microbiology(all)Medical TerminologySDG 3 - Good Health and Well-being1759874.Y.B.wassupportedbythe ProfessionalAssociationoftheAllianceof Publisher Copyright: Copyright: This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.A universal taxonomy of viruses is essential for a comprehensive view of the virus world and for communicating the complicated evolutionary relationships among viruses. However, there are major differences in the conceptualisation and approaches to virus classification and nomenclature among virologists, clinicians, agronomists, and other interested parties. Here, we provide recommendations to guide the construction of a coherent and comprehensive virus taxonomy, based on expert scientific consensus. Firstly, assignments of viruses should be congruent with the best attainable reconstruction of their evolutionary histories, i.e., taxa should be monophyletic. This fundamental principle for classification of viruses is currently included in the International Committee on Taxonomy of Viruses (ICTV) code only for the rank of species. Secondly, phenotypic and ecological properties of viruses may inform, but not override, evolutionary relatedness in the placement of ranks. Thirdly, alternative classifications that consider phenotypic attributes, such as being vector-borne (e.g., “arboviruses”), infecting a certain type of host (e.g., “mycoviruses,” “bacteriophages”) or displaying specific pathogenicity (e.g., “human immunodeficiency viruses”), may serve important clinical and regulatory purposes but often create polyphyletic categories that do not reflect evolutionary relationships. Nevertheless, such classifications ought to be maintained if they serve the needs of specific communities or play a practical clinical or regulatory role. However, they should not be considered or called taxonomies. Finally, while an evolution-based framework enables viruses discovered by metagenomics to be incorporated into the ICTV taxonomy, there are essential requirements for quality control of the sequence data used for these assignments. Combined, these four principles will enable future development and expansion of virus taxonomy as the true evolutionary diversity of viruses becomes apparent.Instituto de Higiene e Medicina Tropical (IHMT)Global Health and Tropical Medicine (GHTM)TB, HIV and opportunistic diseases and pathogens (THOP)RUNSimmonds, PeterAdriaenssens, Evelien M.Murilo Zerbini, F.Abrescia, Nicola G.A.Aiewsakun, PakornAlfenas-Zerbini, PolianeBao, YimingBarylski, JakubDrosten, ChristianDuffy, SiobainPaul Duprex, W.Dutilh, Bas E.Elena, Santiago F.García, Maria LauraJunglen, SandraKatzourakis, ArisKoonin, Eugene V.Krupovic, MartKuhn, Jens H.Lambert, Amy J.Lefkowitz, Elliot J.Łobocka, MałgorzataLood, CédricMahony, JenniferMeier-Kolthoff, Jan P.Mushegian, Arcady R.Oksanen, Hanna M.Poranen, Minna M.Reyes-Muñoz, AlejandroRobertson, David L.Roux, SimonRubino, LuisaSabanadzovic, SeadSiddell, StuartSkern, TimSmith, Donald B.Sullivan, Matthew B.Suzuki, NobuhiroTurner, DannVan Doorslaer, KoenraadVandamme, Anne MiekeVarsani, ArvindVasilakis, Nikos2023-07-14T22:19:03Z2023-022023-02-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article23application/pdfhttp://hdl.handle.net/10362/155299eng1544-9173PURE: 64345026https://doi.org/10.1371/journal.pbio.3001922info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-11T05:37:51Zoai:run.unl.pt:10362/155299Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:56:01.157671Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
| dc.title.none.fl_str_mv |
Four principles to establish a universal virus taxonomy |
| title |
Four principles to establish a universal virus taxonomy |
| spellingShingle |
Four principles to establish a universal virus taxonomy Simmonds, Peter universal virus taxonomy principles QR355 Virology R Medicine Neuroscience(all) Biochemistry, Genetics and Molecular Biology(all) Immunology and Microbiology(all) Medical Terminology SDG 3 - Good Health and Well-being |
| title_short |
Four principles to establish a universal virus taxonomy |
| title_full |
Four principles to establish a universal virus taxonomy |
| title_fullStr |
Four principles to establish a universal virus taxonomy |
| title_full_unstemmed |
Four principles to establish a universal virus taxonomy |
| title_sort |
Four principles to establish a universal virus taxonomy |
| author |
Simmonds, Peter |
| author_facet |
Simmonds, Peter Adriaenssens, Evelien M. Murilo Zerbini, F. Abrescia, Nicola G.A. Aiewsakun, Pakorn Alfenas-Zerbini, Poliane Bao, Yiming Barylski, Jakub Drosten, Christian Duffy, Siobain Paul Duprex, W. Dutilh, Bas E. Elena, Santiago F. García, Maria Laura Junglen, Sandra Katzourakis, Aris Koonin, Eugene V. Krupovic, Mart Kuhn, Jens H. Lambert, Amy J. Lefkowitz, Elliot J. Łobocka, Małgorzata Lood, Cédric Mahony, Jennifer Meier-Kolthoff, Jan P. Mushegian, Arcady R. Oksanen, Hanna M. Poranen, Minna M. Reyes-Muñoz, Alejandro Robertson, David L. Roux, Simon Rubino, Luisa Sabanadzovic, Sead Siddell, Stuart Skern, Tim Smith, Donald B. Sullivan, Matthew B. Suzuki, Nobuhiro Turner, Dann Van Doorslaer, Koenraad Vandamme, Anne Mieke Varsani, Arvind Vasilakis, Nikos |
| author_role |
author |
| author2 |
Adriaenssens, Evelien M. Murilo Zerbini, F. Abrescia, Nicola G.A. Aiewsakun, Pakorn Alfenas-Zerbini, Poliane Bao, Yiming Barylski, Jakub Drosten, Christian Duffy, Siobain Paul Duprex, W. Dutilh, Bas E. Elena, Santiago F. García, Maria Laura Junglen, Sandra Katzourakis, Aris Koonin, Eugene V. Krupovic, Mart Kuhn, Jens H. Lambert, Amy J. Lefkowitz, Elliot J. Łobocka, Małgorzata Lood, Cédric Mahony, Jennifer Meier-Kolthoff, Jan P. Mushegian, Arcady R. Oksanen, Hanna M. Poranen, Minna M. Reyes-Muñoz, Alejandro Robertson, David L. Roux, Simon Rubino, Luisa Sabanadzovic, Sead Siddell, Stuart Skern, Tim Smith, Donald B. Sullivan, Matthew B. Suzuki, Nobuhiro Turner, Dann Van Doorslaer, Koenraad Vandamme, Anne Mieke Varsani, Arvind Vasilakis, Nikos |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
| dc.contributor.none.fl_str_mv |
Instituto de Higiene e Medicina Tropical (IHMT) Global Health and Tropical Medicine (GHTM) TB, HIV and opportunistic diseases and pathogens (THOP) RUN |
| dc.contributor.author.fl_str_mv |
Simmonds, Peter Adriaenssens, Evelien M. Murilo Zerbini, F. Abrescia, Nicola G.A. Aiewsakun, Pakorn Alfenas-Zerbini, Poliane Bao, Yiming Barylski, Jakub Drosten, Christian Duffy, Siobain Paul Duprex, W. Dutilh, Bas E. Elena, Santiago F. García, Maria Laura Junglen, Sandra Katzourakis, Aris Koonin, Eugene V. Krupovic, Mart Kuhn, Jens H. Lambert, Amy J. Lefkowitz, Elliot J. Łobocka, Małgorzata Lood, Cédric Mahony, Jennifer Meier-Kolthoff, Jan P. Mushegian, Arcady R. Oksanen, Hanna M. Poranen, Minna M. Reyes-Muñoz, Alejandro Robertson, David L. Roux, Simon Rubino, Luisa Sabanadzovic, Sead Siddell, Stuart Skern, Tim Smith, Donald B. Sullivan, Matthew B. Suzuki, Nobuhiro Turner, Dann Van Doorslaer, Koenraad Vandamme, Anne Mieke Varsani, Arvind Vasilakis, Nikos |
| dc.subject.por.fl_str_mv |
universal virus taxonomy principles QR355 Virology R Medicine Neuroscience(all) Biochemistry, Genetics and Molecular Biology(all) Immunology and Microbiology(all) Medical Terminology SDG 3 - Good Health and Well-being |
| topic |
universal virus taxonomy principles QR355 Virology R Medicine Neuroscience(all) Biochemistry, Genetics and Molecular Biology(all) Immunology and Microbiology(all) Medical Terminology SDG 3 - Good Health and Well-being |
| description |
1759874.Y.B.wassupportedbythe ProfessionalAssociationoftheAllianceof Publisher Copyright: Copyright: This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication. |
| publishDate |
2023 |
| dc.date.none.fl_str_mv |
2023-07-14T22:19:03Z 2023-02 2023-02-01T00:00:00Z |
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info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/article |
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article |
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publishedVersion |
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http://hdl.handle.net/10362/155299 |
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http://hdl.handle.net/10362/155299 |
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eng |
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eng |
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1544-9173 PURE: 64345026 https://doi.org/10.1371/journal.pbio.3001922 |
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info:eu-repo/semantics/openAccess |
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openAccess |
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23 application/pdf |
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