Sensitivity analysis and reduction of a dynamic model of a bioproduction of fructo-oligosaccharides
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/1822/61811 |
Resumo: | Starting from a relatively detailed model of a bioprocess producing fructo-oligosaccharides, a set of experimental data collected in batch and fed-batch experiments is exploited to estimate the unknown model parameters. The original model includes the growth of the fungus Aureobasidium pullulans which produces the enzymes responsible for the hydrolysis and transfructosylation reactions, and as such contains 25 kinetic parameters and 16 pseudo-stoichiometric coefficients, which are not uniquely identifiable with the data at hand. The aim of this study is, therefore, to show how sensitivity analysis and quantitative indicators based on the Fisher information matrix can be used to reduce the detailed model to a practically identifiable model. Parametric sensitivity analysis can indeed be used to progressively simplify the model to a representation involving 15 kinetic parameters and 8 pseudo-stoichiometric coefficients. The reduced model provides satisfactory prediction and can be convincingly cross validated. |
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Sensitivity analysis and reduction of a dynamic model of a bioproduction of fructo-oligosaccharidesMathematical modelingFisher information matrixParameter identificationBiotechnologyScience & TechnologyStarting from a relatively detailed model of a bioprocess producing fructo-oligosaccharides, a set of experimental data collected in batch and fed-batch experiments is exploited to estimate the unknown model parameters. The original model includes the growth of the fungus Aureobasidium pullulans which produces the enzymes responsible for the hydrolysis and transfructosylation reactions, and as such contains 25 kinetic parameters and 16 pseudo-stoichiometric coefficients, which are not uniquely identifiable with the data at hand. The aim of this study is, therefore, to show how sensitivity analysis and quantitative indicators based on the Fisher information matrix can be used to reduce the detailed model to a practically identifiable model. Parametric sensitivity analysis can indeed be used to progressively simplify the model to a representation involving 15 kinetic parameters and 8 pseudo-stoichiometric coefficients. The reduced model provides satisfactory prediction and can be convincingly cross validated.The authors thank the financial support from the F.R.S.-FNRS, the Belgium National Fund for the Scientific Research (Research Project 24643.08). C. Nobre thanks the Fundação para a Ciência e Tecnologia for the strategic funding of UID/BIO/04469 /2013 unit.info:eu-repo/semantics/publishedVersionSpringer NatureUniversidade do MinhoFekih-Salem, R.Dewasme, L.Castro, Cristiana CordeiroGonçalves, Clarisse Salomé NobreHantson, A. -L.Wouwer, A. Vande2019-112019-11-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/61811engFekih-Salem, R.; Dewasme, L.; Castro, Cristiana Cordeiro; Nobre, Clarisse; Hantson, A. -L.; Wouwer, A. Vande, Sensitivity analysis and reduction of a dynamic model of a bioproduction of fructo-oligosaccharides. Bioprocess and Biosystems Engineering, 42(11), 1793-1808, 20191615-75911615-760510.1007/s00449-019-02176-931375963http://www.springer.com/chemistry/biotechnology/journal/449info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:09:15Zoai:repositorium.sdum.uminho.pt:1822/61811Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:00:37.151500Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Sensitivity analysis and reduction of a dynamic model of a bioproduction of fructo-oligosaccharides |
title |
Sensitivity analysis and reduction of a dynamic model of a bioproduction of fructo-oligosaccharides |
spellingShingle |
Sensitivity analysis and reduction of a dynamic model of a bioproduction of fructo-oligosaccharides Fekih-Salem, R. Mathematical modeling Fisher information matrix Parameter identification Biotechnology Science & Technology |
title_short |
Sensitivity analysis and reduction of a dynamic model of a bioproduction of fructo-oligosaccharides |
title_full |
Sensitivity analysis and reduction of a dynamic model of a bioproduction of fructo-oligosaccharides |
title_fullStr |
Sensitivity analysis and reduction of a dynamic model of a bioproduction of fructo-oligosaccharides |
title_full_unstemmed |
Sensitivity analysis and reduction of a dynamic model of a bioproduction of fructo-oligosaccharides |
title_sort |
Sensitivity analysis and reduction of a dynamic model of a bioproduction of fructo-oligosaccharides |
author |
Fekih-Salem, R. |
author_facet |
Fekih-Salem, R. Dewasme, L. Castro, Cristiana Cordeiro Gonçalves, Clarisse Salomé Nobre Hantson, A. -L. Wouwer, A. Vande |
author_role |
author |
author2 |
Dewasme, L. Castro, Cristiana Cordeiro Gonçalves, Clarisse Salomé Nobre Hantson, A. -L. Wouwer, A. Vande |
author2_role |
author author author author author |
dc.contributor.none.fl_str_mv |
Universidade do Minho |
dc.contributor.author.fl_str_mv |
Fekih-Salem, R. Dewasme, L. Castro, Cristiana Cordeiro Gonçalves, Clarisse Salomé Nobre Hantson, A. -L. Wouwer, A. Vande |
dc.subject.por.fl_str_mv |
Mathematical modeling Fisher information matrix Parameter identification Biotechnology Science & Technology |
topic |
Mathematical modeling Fisher information matrix Parameter identification Biotechnology Science & Technology |
description |
Starting from a relatively detailed model of a bioprocess producing fructo-oligosaccharides, a set of experimental data collected in batch and fed-batch experiments is exploited to estimate the unknown model parameters. The original model includes the growth of the fungus Aureobasidium pullulans which produces the enzymes responsible for the hydrolysis and transfructosylation reactions, and as such contains 25 kinetic parameters and 16 pseudo-stoichiometric coefficients, which are not uniquely identifiable with the data at hand. The aim of this study is, therefore, to show how sensitivity analysis and quantitative indicators based on the Fisher information matrix can be used to reduce the detailed model to a practically identifiable model. Parametric sensitivity analysis can indeed be used to progressively simplify the model to a representation involving 15 kinetic parameters and 8 pseudo-stoichiometric coefficients. The reduced model provides satisfactory prediction and can be convincingly cross validated. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-11 2019-11-01T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/1822/61811 |
url |
http://hdl.handle.net/1822/61811 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Fekih-Salem, R.; Dewasme, L.; Castro, Cristiana Cordeiro; Nobre, Clarisse; Hantson, A. -L.; Wouwer, A. Vande, Sensitivity analysis and reduction of a dynamic model of a bioproduction of fructo-oligosaccharides. Bioprocess and Biosystems Engineering, 42(11), 1793-1808, 2019 1615-7591 1615-7605 10.1007/s00449-019-02176-9 31375963 http://www.springer.com/chemistry/biotechnology/journal/449 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Springer Nature |
publisher.none.fl_str_mv |
Springer Nature |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
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RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
collection |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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1799132401859821568 |