Heterologous primer transferability and access to microsatellite loci polymorphism in ‘somnus’ passion fruit tree (Passiflora setacea DC)

Detalhes bibliográficos
Autor(a) principal: Pereira, Douglas de Almeida
Data de Publicação: 2015
Outros Autores: Gaiotto, Fernanda Amato, Corrêa, Ronan Xavier, de Oliveira, Antonio Carlos
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Biotemas (Online)
Texto Completo: https://periodicos.ufsc.br/index.php/biotemas/article/view/2175-7925.2015v28n3p51
Resumo: Primer pairs that access microsatellite loci, initially constructed through the genome of Passiflora edulis Sims flavicarpa and P. alata, were tested concerning their ability to access microsatellite loci in ‘somnus’ passion fruit tree (P. setacea) individuals. Seven out of the thirty one primer pairs tested were able to access DNA polymorphism in the genome of this wild Passiflora species, by evaluating six natural populations, located in a transition area between the biomes Caatinga and Cerrado, in the state of Bahia, Brazil. The number of alleles/loci was small, oscillating from 1 to 4. The average heterozygosity observed per locus in all populations ranged from 0.13 to 0.40. There was transference of heterologous microsatellite primer pairs from the Passiflora genus to ‘somnus’ passion fruit tree, constituting a new set of primers that access random co-dominant locus in this species, useful for conservationist purposes and pre-improvement of ‘somnus’ passion fruit tree. 
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spelling Heterologous primer transferability and access to microsatellite loci polymorphism in ‘somnus’ passion fruit tree (Passiflora setacea DC)Transferibilidade de primers heterólogos e acesso ao polimorfismo de loci microssatélites em maracujazeiro-do-sono (Passiflora setacea DC)Primer pairs that access microsatellite loci, initially constructed through the genome of Passiflora edulis Sims flavicarpa and P. alata, were tested concerning their ability to access microsatellite loci in ‘somnus’ passion fruit tree (P. setacea) individuals. Seven out of the thirty one primer pairs tested were able to access DNA polymorphism in the genome of this wild Passiflora species, by evaluating six natural populations, located in a transition area between the biomes Caatinga and Cerrado, in the state of Bahia, Brazil. The number of alleles/loci was small, oscillating from 1 to 4. The average heterozygosity observed per locus in all populations ranged from 0.13 to 0.40. There was transference of heterologous microsatellite primer pairs from the Passiflora genus to ‘somnus’ passion fruit tree, constituting a new set of primers that access random co-dominant locus in this species, useful for conservationist purposes and pre-improvement of ‘somnus’ passion fruit tree. Pares de primers que acessam loci microssatélites, inicialmente construídos a partir do genoma de Passiflora edulis Sims flavicarpa e P. alata, foram testados quanto à sua capacidade de acessar loci microssatélites em indivíduos de maracujazeiro-do-sono (P. setacea). Sete dos trinta e um pares de primers testados foram capazes de acessar polimorfismo de DNA no genoma dessa espécie silvestre de Passiflora, ao avaliar seis populações naturais, localizadas em área de transição entre os biomas Caatinga e Cerrado, no estado da Bahia. O número de alelos/loci foi baixo, oscilando de um a quatro. A heterozigosidade média observada por locus em todas as populações variou de 0,13 a 0,40. Houve transferência dos pares de primers microssatélites heterólogos do gênero Passiflora para maracujazeiro-do-sono, constituindo um novo conjunto de primers que acessam locus codominante aleatório nessa espécie, útil para fins de conservação e pré-melhoramento do maracujazeiro-do-sono.Universidade Federal de Santa Catarina2015-04-09info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://periodicos.ufsc.br/index.php/biotemas/article/view/2175-7925.2015v28n3p5110.5007/2175-7925.2015v28n3p51Biotemas; v. 28 n. 3 (2015); 51-562175-79250103-1643reponame:Biotemas (Online)instname:Universidade Federal de Santa Catarina (UFSC)instacron:UFSCenghttps://periodicos.ufsc.br/index.php/biotemas/article/view/2175-7925.2015v28n3p51/29977Copyright (c) 2015 Douglas de Almeida Pereira, Fernanda Amato Gaiotto, Ronan Xavier Corrêa, Antonio Carlos de Oliveirainfo:eu-repo/semantics/openAccessPereira, Douglas de AlmeidaGaiotto, Fernanda AmatoCorrêa, Ronan Xavierde Oliveira, Antonio Carlos2017-10-19T16:05:22Zoai:periodicos.ufsc.br:article/34331Revistahttp://www.biotemas.ufsc.br/index.htmPUBhttps://periodicos.ufsc.br/index.php/biotemas/oai||carlospinto@ccb.ufsc.br2175-79250103-1643opendoar:2017-10-19T16:05:22Biotemas (Online) - Universidade Federal de Santa Catarina (UFSC)false
dc.title.none.fl_str_mv Heterologous primer transferability and access to microsatellite loci polymorphism in ‘somnus’ passion fruit tree (Passiflora setacea DC)
Transferibilidade de primers heterólogos e acesso ao polimorfismo de loci microssatélites em maracujazeiro-do-sono (Passiflora setacea DC)
title Heterologous primer transferability and access to microsatellite loci polymorphism in ‘somnus’ passion fruit tree (Passiflora setacea DC)
spellingShingle Heterologous primer transferability and access to microsatellite loci polymorphism in ‘somnus’ passion fruit tree (Passiflora setacea DC)
Pereira, Douglas de Almeida
title_short Heterologous primer transferability and access to microsatellite loci polymorphism in ‘somnus’ passion fruit tree (Passiflora setacea DC)
title_full Heterologous primer transferability and access to microsatellite loci polymorphism in ‘somnus’ passion fruit tree (Passiflora setacea DC)
title_fullStr Heterologous primer transferability and access to microsatellite loci polymorphism in ‘somnus’ passion fruit tree (Passiflora setacea DC)
title_full_unstemmed Heterologous primer transferability and access to microsatellite loci polymorphism in ‘somnus’ passion fruit tree (Passiflora setacea DC)
title_sort Heterologous primer transferability and access to microsatellite loci polymorphism in ‘somnus’ passion fruit tree (Passiflora setacea DC)
author Pereira, Douglas de Almeida
author_facet Pereira, Douglas de Almeida
Gaiotto, Fernanda Amato
Corrêa, Ronan Xavier
de Oliveira, Antonio Carlos
author_role author
author2 Gaiotto, Fernanda Amato
Corrêa, Ronan Xavier
de Oliveira, Antonio Carlos
author2_role author
author
author
dc.contributor.author.fl_str_mv Pereira, Douglas de Almeida
Gaiotto, Fernanda Amato
Corrêa, Ronan Xavier
de Oliveira, Antonio Carlos
description Primer pairs that access microsatellite loci, initially constructed through the genome of Passiflora edulis Sims flavicarpa and P. alata, were tested concerning their ability to access microsatellite loci in ‘somnus’ passion fruit tree (P. setacea) individuals. Seven out of the thirty one primer pairs tested were able to access DNA polymorphism in the genome of this wild Passiflora species, by evaluating six natural populations, located in a transition area between the biomes Caatinga and Cerrado, in the state of Bahia, Brazil. The number of alleles/loci was small, oscillating from 1 to 4. The average heterozygosity observed per locus in all populations ranged from 0.13 to 0.40. There was transference of heterologous microsatellite primer pairs from the Passiflora genus to ‘somnus’ passion fruit tree, constituting a new set of primers that access random co-dominant locus in this species, useful for conservationist purposes and pre-improvement of ‘somnus’ passion fruit tree. 
publishDate 2015
dc.date.none.fl_str_mv 2015-04-09
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://periodicos.ufsc.br/index.php/biotemas/article/view/2175-7925.2015v28n3p51
10.5007/2175-7925.2015v28n3p51
url https://periodicos.ufsc.br/index.php/biotemas/article/view/2175-7925.2015v28n3p51
identifier_str_mv 10.5007/2175-7925.2015v28n3p51
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://periodicos.ufsc.br/index.php/biotemas/article/view/2175-7925.2015v28n3p51/29977
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Santa Catarina
publisher.none.fl_str_mv Universidade Federal de Santa Catarina
dc.source.none.fl_str_mv Biotemas; v. 28 n. 3 (2015); 51-56
2175-7925
0103-1643
reponame:Biotemas (Online)
instname:Universidade Federal de Santa Catarina (UFSC)
instacron:UFSC
instname_str Universidade Federal de Santa Catarina (UFSC)
instacron_str UFSC
institution UFSC
reponame_str Biotemas (Online)
collection Biotemas (Online)
repository.name.fl_str_mv Biotemas (Online) - Universidade Federal de Santa Catarina (UFSC)
repository.mail.fl_str_mv ||carlospinto@ccb.ufsc.br
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