The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age
Autor(a) principal: | |
---|---|
Data de Publicação: | 2021 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1172/jci.insight.147535 http://hdl.handle.net/11449/210433 |
Resumo: | The fact that the COVID-19 fatality rate varies by sex and age is poorly understood. Notably, the outcome of SARS-CoV-2 infections mostly depends on the control of cytokine storm and the increasingly recognized pathological role of uncontrolled neutrophil activation. Here, we used an integrative approach with publicly available RNA-Seq data sets of nasopharyngeal swabs and peripheral blood leukocytes from patients with SARS-CoV-2, according to sex and age. Female and young patients infected by SARS-CoV-2 exhibited a larger number of differentially expressed genes (DEGs) compared with male and elderly patients, indicating a stronger immune modulation. Among them, we found an association between upregulated cytokine/chemokine- and downregulated neutrophil-related DEGs. This was correlated with a closer relationship between female and young subjects, while the relationship between male and elderly patients was closer still. The association between these cytokine/chemokines and neutrophil DEGs is marked by a strongly correlated interferome network. Here, female patients exhibited reduced transcriptional levels of key proinflammatory/neutrophil-related genes, such as CXCL8 receptors (CXCR1 and CXCR2), IL-1 beta, S100A9, ITGAM, and DBNL, compared with male patients. These genes are well known to be protective against inflammatory damage. Therefore, our work suggests specific immune-regulatory pathways associated with sex and age of patients infected with SARS-CoV-2 and provides a possible association between inverse modulation of cytokine/chemokine and neutrophil transcriptional signatures. |
id |
UNSP_c8c1958dc26c65e1acecc0920d3466a2 |
---|---|
oai_identifier_str |
oai:repositorio.unesp.br:11449/210433 |
network_acronym_str |
UNSP |
network_name_str |
Repositório Institucional da UNESP |
repository_id_str |
2946 |
spelling |
The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and ageThe fact that the COVID-19 fatality rate varies by sex and age is poorly understood. Notably, the outcome of SARS-CoV-2 infections mostly depends on the control of cytokine storm and the increasingly recognized pathological role of uncontrolled neutrophil activation. Here, we used an integrative approach with publicly available RNA-Seq data sets of nasopharyngeal swabs and peripheral blood leukocytes from patients with SARS-CoV-2, according to sex and age. Female and young patients infected by SARS-CoV-2 exhibited a larger number of differentially expressed genes (DEGs) compared with male and elderly patients, indicating a stronger immune modulation. Among them, we found an association between upregulated cytokine/chemokine- and downregulated neutrophil-related DEGs. This was correlated with a closer relationship between female and young subjects, while the relationship between male and elderly patients was closer still. The association between these cytokine/chemokines and neutrophil DEGs is marked by a strongly correlated interferome network. Here, female patients exhibited reduced transcriptional levels of key proinflammatory/neutrophil-related genes, such as CXCL8 receptors (CXCR1 and CXCR2), IL-1 beta, S100A9, ITGAM, and DBNL, compared with male patients. These genes are well known to be protective against inflammatory damage. Therefore, our work suggests specific immune-regulatory pathways associated with sex and age of patients infected with SARS-CoV-2 and provides a possible association between inverse modulation of cytokine/chemokine and neutrophil transcriptional signatures.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Ontario Research FundNatural Sciences Research CouncilCanada Foundation for InnovationIBMCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Santander Universidades (Banco Santander Brasil S/A)Univ Sao Paulo, Dept Immunol, Inst Biomed Sci, Lineu Prestes Ave 1730, BR-05508 Sao Paulo, BrazilUniv Sao Paulo, Sch Pharmaceut Sci, Dept Clin & Toxicol Anal, Sao Paulo, SP, BrazilUniv Freiburg, Fac Med, Dept Hematol & Oncol, Freiburg, GermanyHaraldsplass Deaconess Hosp, Dept Internal Med, Bergen, NorwaySao Paulo State Univ, Inst Biosci, Dept Struct & Funct Biol, Botucatu, SP, BrazilUniv Sao Paulo, Inst Biomed Sci, Dept Microbiol, Vaccine Dev Lab, Sao Paulo, BrazilUniv Toronto, Krembil Res Inst, Univ Hlth Network, Toronto, ON, CanadaUniv Toronto, Dept Med Biophys, Toronto, ON, CanadaUniv Toronto, Dept Comp Sci, Toronto, ON, CanadaUniv Washington, Sch Med, Dept Pediat, Seattle, WA 98195 USASeattle Childrens Res Inst, Seattle, WA USAUniversal Sci Educ & Res Network, Network Immun Infect Malignancy & Autoimmun, Sao Paulo, BrazilSao Paulo State Univ, Inst Biosci, Dept Struct & Funct Biol, Botucatu, SP, BrazilFAPESP: 2017/05264-7FAPESP: 2018/188869FAPESP: 2020/01688-0FAPESP: 2020/07069-0FAPESP: 2020/07972-1FAPESP: 2020/09146-1FAPESP: 13/50343-1CNPq: 311530/2019-2Ontario Research Fund: 34876Natural Sciences Research Council: 203475Canada Foundation for Innovation: 29272Canada Foundation for Innovation: 225404Canada Foundation for Innovation: 33536CAPES: 001Amer Soc Clinical Investigation IncUniversidade de São Paulo (USP)Univ FreiburgHaraldsplass Deaconess HospUniversidade Estadual Paulista (Unesp)Univ TorontoUniv WashingtonSeattle Childrens Res InstUniversal Sci Educ & Res NetworkFreire, Paula P.Marques, Alexandre H. C.Baiocchi, Gabriela C.Schimke, Lena F.Fonseca, Dennyson L. M.Salgado, Ranieri C.Filgueiras, Igor S.Napoleao, Sarah M. S.Placa, Desiree R.Akashi, Karen T.Crespo Hirata, Thiago DominguezEl Khawanky, NadiaGiil, Lasse M.Cabral-Miranda, GustavoCarvalho, Robson F. [UNESP]Ferreira, Luis Carlos S.Condino-Neto, AntonioNakaya, HelderJurisica, IgorOchs, Hans D.Saraiva Camara, Niels OlsenCalich, Vera Lucia G.Cabral-Marques, Otavio2021-06-25T15:20:28Z2021-06-25T15:20:28Z2021-05-24info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article17http://dx.doi.org/10.1172/jci.insight.147535Jci Insight. Ann Arbor: Amer Soc Clinical Investigation Inc, v. 6, n. 10, 17 p., 2021.http://hdl.handle.net/11449/21043310.1172/jci.insight.147535WOS:000653507400023Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJci Insightinfo:eu-repo/semantics/openAccess2024-06-24T14:51:52Zoai:repositorio.unesp.br:11449/210433Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T20:14:35.206289Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age |
title |
The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age |
spellingShingle |
The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age Freire, Paula P. |
title_short |
The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age |
title_full |
The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age |
title_fullStr |
The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age |
title_full_unstemmed |
The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age |
title_sort |
The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age |
author |
Freire, Paula P. |
author_facet |
Freire, Paula P. Marques, Alexandre H. C. Baiocchi, Gabriela C. Schimke, Lena F. Fonseca, Dennyson L. M. Salgado, Ranieri C. Filgueiras, Igor S. Napoleao, Sarah M. S. Placa, Desiree R. Akashi, Karen T. Crespo Hirata, Thiago Dominguez El Khawanky, Nadia Giil, Lasse M. Cabral-Miranda, Gustavo Carvalho, Robson F. [UNESP] Ferreira, Luis Carlos S. Condino-Neto, Antonio Nakaya, Helder Jurisica, Igor Ochs, Hans D. Saraiva Camara, Niels Olsen Calich, Vera Lucia G. Cabral-Marques, Otavio |
author_role |
author |
author2 |
Marques, Alexandre H. C. Baiocchi, Gabriela C. Schimke, Lena F. Fonseca, Dennyson L. M. Salgado, Ranieri C. Filgueiras, Igor S. Napoleao, Sarah M. S. Placa, Desiree R. Akashi, Karen T. Crespo Hirata, Thiago Dominguez El Khawanky, Nadia Giil, Lasse M. Cabral-Miranda, Gustavo Carvalho, Robson F. [UNESP] Ferreira, Luis Carlos S. Condino-Neto, Antonio Nakaya, Helder Jurisica, Igor Ochs, Hans D. Saraiva Camara, Niels Olsen Calich, Vera Lucia G. Cabral-Marques, Otavio |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade de São Paulo (USP) Univ Freiburg Haraldsplass Deaconess Hosp Universidade Estadual Paulista (Unesp) Univ Toronto Univ Washington Seattle Childrens Res Inst Universal Sci Educ & Res Network |
dc.contributor.author.fl_str_mv |
Freire, Paula P. Marques, Alexandre H. C. Baiocchi, Gabriela C. Schimke, Lena F. Fonseca, Dennyson L. M. Salgado, Ranieri C. Filgueiras, Igor S. Napoleao, Sarah M. S. Placa, Desiree R. Akashi, Karen T. Crespo Hirata, Thiago Dominguez El Khawanky, Nadia Giil, Lasse M. Cabral-Miranda, Gustavo Carvalho, Robson F. [UNESP] Ferreira, Luis Carlos S. Condino-Neto, Antonio Nakaya, Helder Jurisica, Igor Ochs, Hans D. Saraiva Camara, Niels Olsen Calich, Vera Lucia G. Cabral-Marques, Otavio |
description |
The fact that the COVID-19 fatality rate varies by sex and age is poorly understood. Notably, the outcome of SARS-CoV-2 infections mostly depends on the control of cytokine storm and the increasingly recognized pathological role of uncontrolled neutrophil activation. Here, we used an integrative approach with publicly available RNA-Seq data sets of nasopharyngeal swabs and peripheral blood leukocytes from patients with SARS-CoV-2, according to sex and age. Female and young patients infected by SARS-CoV-2 exhibited a larger number of differentially expressed genes (DEGs) compared with male and elderly patients, indicating a stronger immune modulation. Among them, we found an association between upregulated cytokine/chemokine- and downregulated neutrophil-related DEGs. This was correlated with a closer relationship between female and young subjects, while the relationship between male and elderly patients was closer still. The association between these cytokine/chemokines and neutrophil DEGs is marked by a strongly correlated interferome network. Here, female patients exhibited reduced transcriptional levels of key proinflammatory/neutrophil-related genes, such as CXCL8 receptors (CXCR1 and CXCR2), IL-1 beta, S100A9, ITGAM, and DBNL, compared with male patients. These genes are well known to be protective against inflammatory damage. Therefore, our work suggests specific immune-regulatory pathways associated with sex and age of patients infected with SARS-CoV-2 and provides a possible association between inverse modulation of cytokine/chemokine and neutrophil transcriptional signatures. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-06-25T15:20:28Z 2021-06-25T15:20:28Z 2021-05-24 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1172/jci.insight.147535 Jci Insight. Ann Arbor: Amer Soc Clinical Investigation Inc, v. 6, n. 10, 17 p., 2021. http://hdl.handle.net/11449/210433 10.1172/jci.insight.147535 WOS:000653507400023 |
url |
http://dx.doi.org/10.1172/jci.insight.147535 http://hdl.handle.net/11449/210433 |
identifier_str_mv |
Jci Insight. Ann Arbor: Amer Soc Clinical Investigation Inc, v. 6, n. 10, 17 p., 2021. 10.1172/jci.insight.147535 WOS:000653507400023 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Jci Insight |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
17 |
dc.publisher.none.fl_str_mv |
Amer Soc Clinical Investigation Inc |
publisher.none.fl_str_mv |
Amer Soc Clinical Investigation Inc |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808129177693454336 |