The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age

Detalhes bibliográficos
Autor(a) principal: Freire, Paula P.
Data de Publicação: 2021
Outros Autores: Marques, Alexandre H. C., Baiocchi, Gabriela C., Schimke, Lena F., Fonseca, Dennyson L. M., Salgado, Ranieri C., Filgueiras, Igor S., Napoleao, Sarah M. S., Placa, Desiree R., Akashi, Karen T., Crespo Hirata, Thiago Dominguez, El Khawanky, Nadia, Giil, Lasse M., Cabral-Miranda, Gustavo, Carvalho, Robson F. [UNESP], Ferreira, Luis Carlos S., Condino-Neto, Antonio, Nakaya, Helder, Jurisica, Igor, Ochs, Hans D., Saraiva Camara, Niels Olsen, Calich, Vera Lucia G., Cabral-Marques, Otavio
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1172/jci.insight.147535
http://hdl.handle.net/11449/210433
Resumo: The fact that the COVID-19 fatality rate varies by sex and age is poorly understood. Notably, the outcome of SARS-CoV-2 infections mostly depends on the control of cytokine storm and the increasingly recognized pathological role of uncontrolled neutrophil activation. Here, we used an integrative approach with publicly available RNA-Seq data sets of nasopharyngeal swabs and peripheral blood leukocytes from patients with SARS-CoV-2, according to sex and age. Female and young patients infected by SARS-CoV-2 exhibited a larger number of differentially expressed genes (DEGs) compared with male and elderly patients, indicating a stronger immune modulation. Among them, we found an association between upregulated cytokine/chemokine- and downregulated neutrophil-related DEGs. This was correlated with a closer relationship between female and young subjects, while the relationship between male and elderly patients was closer still. The association between these cytokine/chemokines and neutrophil DEGs is marked by a strongly correlated interferome network. Here, female patients exhibited reduced transcriptional levels of key proinflammatory/neutrophil-related genes, such as CXCL8 receptors (CXCR1 and CXCR2), IL-1 beta, S100A9, ITGAM, and DBNL, compared with male patients. These genes are well known to be protective against inflammatory damage. Therefore, our work suggests specific immune-regulatory pathways associated with sex and age of patients infected with SARS-CoV-2 and provides a possible association between inverse modulation of cytokine/chemokine and neutrophil transcriptional signatures.
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spelling The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and ageThe fact that the COVID-19 fatality rate varies by sex and age is poorly understood. Notably, the outcome of SARS-CoV-2 infections mostly depends on the control of cytokine storm and the increasingly recognized pathological role of uncontrolled neutrophil activation. Here, we used an integrative approach with publicly available RNA-Seq data sets of nasopharyngeal swabs and peripheral blood leukocytes from patients with SARS-CoV-2, according to sex and age. Female and young patients infected by SARS-CoV-2 exhibited a larger number of differentially expressed genes (DEGs) compared with male and elderly patients, indicating a stronger immune modulation. Among them, we found an association between upregulated cytokine/chemokine- and downregulated neutrophil-related DEGs. This was correlated with a closer relationship between female and young subjects, while the relationship between male and elderly patients was closer still. The association between these cytokine/chemokines and neutrophil DEGs is marked by a strongly correlated interferome network. Here, female patients exhibited reduced transcriptional levels of key proinflammatory/neutrophil-related genes, such as CXCL8 receptors (CXCR1 and CXCR2), IL-1 beta, S100A9, ITGAM, and DBNL, compared with male patients. These genes are well known to be protective against inflammatory damage. Therefore, our work suggests specific immune-regulatory pathways associated with sex and age of patients infected with SARS-CoV-2 and provides a possible association between inverse modulation of cytokine/chemokine and neutrophil transcriptional signatures.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Ontario Research FundNatural Sciences Research CouncilCanada Foundation for InnovationIBMCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Santander Universidades (Banco Santander Brasil S/A)Univ Sao Paulo, Dept Immunol, Inst Biomed Sci, Lineu Prestes Ave 1730, BR-05508 Sao Paulo, BrazilUniv Sao Paulo, Sch Pharmaceut Sci, Dept Clin & Toxicol Anal, Sao Paulo, SP, BrazilUniv Freiburg, Fac Med, Dept Hematol & Oncol, Freiburg, GermanyHaraldsplass Deaconess Hosp, Dept Internal Med, Bergen, NorwaySao Paulo State Univ, Inst Biosci, Dept Struct & Funct Biol, Botucatu, SP, BrazilUniv Sao Paulo, Inst Biomed Sci, Dept Microbiol, Vaccine Dev Lab, Sao Paulo, BrazilUniv Toronto, Krembil Res Inst, Univ Hlth Network, Toronto, ON, CanadaUniv Toronto, Dept Med Biophys, Toronto, ON, CanadaUniv Toronto, Dept Comp Sci, Toronto, ON, CanadaUniv Washington, Sch Med, Dept Pediat, Seattle, WA 98195 USASeattle Childrens Res Inst, Seattle, WA USAUniversal Sci Educ & Res Network, Network Immun Infect Malignancy & Autoimmun, Sao Paulo, BrazilSao Paulo State Univ, Inst Biosci, Dept Struct & Funct Biol, Botucatu, SP, BrazilFAPESP: 2017/05264-7FAPESP: 2018/188869FAPESP: 2020/01688-0FAPESP: 2020/07069-0FAPESP: 2020/07972-1FAPESP: 2020/09146-1FAPESP: 13/50343-1CNPq: 311530/2019-2Ontario Research Fund: 34876Natural Sciences Research Council: 203475Canada Foundation for Innovation: 29272Canada Foundation for Innovation: 225404Canada Foundation for Innovation: 33536CAPES: 001Amer Soc Clinical Investigation IncUniversidade de São Paulo (USP)Univ FreiburgHaraldsplass Deaconess HospUniversidade Estadual Paulista (Unesp)Univ TorontoUniv WashingtonSeattle Childrens Res InstUniversal Sci Educ & Res NetworkFreire, Paula P.Marques, Alexandre H. C.Baiocchi, Gabriela C.Schimke, Lena F.Fonseca, Dennyson L. M.Salgado, Ranieri C.Filgueiras, Igor S.Napoleao, Sarah M. S.Placa, Desiree R.Akashi, Karen T.Crespo Hirata, Thiago DominguezEl Khawanky, NadiaGiil, Lasse M.Cabral-Miranda, GustavoCarvalho, Robson F. [UNESP]Ferreira, Luis Carlos S.Condino-Neto, AntonioNakaya, HelderJurisica, IgorOchs, Hans D.Saraiva Camara, Niels OlsenCalich, Vera Lucia G.Cabral-Marques, Otavio2021-06-25T15:20:28Z2021-06-25T15:20:28Z2021-05-24info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article17http://dx.doi.org/10.1172/jci.insight.147535Jci Insight. Ann Arbor: Amer Soc Clinical Investigation Inc, v. 6, n. 10, 17 p., 2021.http://hdl.handle.net/11449/21043310.1172/jci.insight.147535WOS:000653507400023Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJci Insightinfo:eu-repo/semantics/openAccess2024-06-24T14:51:52Zoai:repositorio.unesp.br:11449/210433Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T20:14:35.206289Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age
title The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age
spellingShingle The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age
Freire, Paula P.
title_short The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age
title_full The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age
title_fullStr The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age
title_full_unstemmed The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age
title_sort The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age
author Freire, Paula P.
author_facet Freire, Paula P.
Marques, Alexandre H. C.
Baiocchi, Gabriela C.
Schimke, Lena F.
Fonseca, Dennyson L. M.
Salgado, Ranieri C.
Filgueiras, Igor S.
Napoleao, Sarah M. S.
Placa, Desiree R.
Akashi, Karen T.
Crespo Hirata, Thiago Dominguez
El Khawanky, Nadia
Giil, Lasse M.
Cabral-Miranda, Gustavo
Carvalho, Robson F. [UNESP]
Ferreira, Luis Carlos S.
Condino-Neto, Antonio
Nakaya, Helder
Jurisica, Igor
Ochs, Hans D.
Saraiva Camara, Niels Olsen
Calich, Vera Lucia G.
Cabral-Marques, Otavio
author_role author
author2 Marques, Alexandre H. C.
Baiocchi, Gabriela C.
Schimke, Lena F.
Fonseca, Dennyson L. M.
Salgado, Ranieri C.
Filgueiras, Igor S.
Napoleao, Sarah M. S.
Placa, Desiree R.
Akashi, Karen T.
Crespo Hirata, Thiago Dominguez
El Khawanky, Nadia
Giil, Lasse M.
Cabral-Miranda, Gustavo
Carvalho, Robson F. [UNESP]
Ferreira, Luis Carlos S.
Condino-Neto, Antonio
Nakaya, Helder
Jurisica, Igor
Ochs, Hans D.
Saraiva Camara, Niels Olsen
Calich, Vera Lucia G.
Cabral-Marques, Otavio
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade de São Paulo (USP)
Univ Freiburg
Haraldsplass Deaconess Hosp
Universidade Estadual Paulista (Unesp)
Univ Toronto
Univ Washington
Seattle Childrens Res Inst
Universal Sci Educ & Res Network
dc.contributor.author.fl_str_mv Freire, Paula P.
Marques, Alexandre H. C.
Baiocchi, Gabriela C.
Schimke, Lena F.
Fonseca, Dennyson L. M.
Salgado, Ranieri C.
Filgueiras, Igor S.
Napoleao, Sarah M. S.
Placa, Desiree R.
Akashi, Karen T.
Crespo Hirata, Thiago Dominguez
El Khawanky, Nadia
Giil, Lasse M.
Cabral-Miranda, Gustavo
Carvalho, Robson F. [UNESP]
Ferreira, Luis Carlos S.
Condino-Neto, Antonio
Nakaya, Helder
Jurisica, Igor
Ochs, Hans D.
Saraiva Camara, Niels Olsen
Calich, Vera Lucia G.
Cabral-Marques, Otavio
description The fact that the COVID-19 fatality rate varies by sex and age is poorly understood. Notably, the outcome of SARS-CoV-2 infections mostly depends on the control of cytokine storm and the increasingly recognized pathological role of uncontrolled neutrophil activation. Here, we used an integrative approach with publicly available RNA-Seq data sets of nasopharyngeal swabs and peripheral blood leukocytes from patients with SARS-CoV-2, according to sex and age. Female and young patients infected by SARS-CoV-2 exhibited a larger number of differentially expressed genes (DEGs) compared with male and elderly patients, indicating a stronger immune modulation. Among them, we found an association between upregulated cytokine/chemokine- and downregulated neutrophil-related DEGs. This was correlated with a closer relationship between female and young subjects, while the relationship between male and elderly patients was closer still. The association between these cytokine/chemokines and neutrophil DEGs is marked by a strongly correlated interferome network. Here, female patients exhibited reduced transcriptional levels of key proinflammatory/neutrophil-related genes, such as CXCL8 receptors (CXCR1 and CXCR2), IL-1 beta, S100A9, ITGAM, and DBNL, compared with male patients. These genes are well known to be protective against inflammatory damage. Therefore, our work suggests specific immune-regulatory pathways associated with sex and age of patients infected with SARS-CoV-2 and provides a possible association between inverse modulation of cytokine/chemokine and neutrophil transcriptional signatures.
publishDate 2021
dc.date.none.fl_str_mv 2021-06-25T15:20:28Z
2021-06-25T15:20:28Z
2021-05-24
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1172/jci.insight.147535
Jci Insight. Ann Arbor: Amer Soc Clinical Investigation Inc, v. 6, n. 10, 17 p., 2021.
http://hdl.handle.net/11449/210433
10.1172/jci.insight.147535
WOS:000653507400023
url http://dx.doi.org/10.1172/jci.insight.147535
http://hdl.handle.net/11449/210433
identifier_str_mv Jci Insight. Ann Arbor: Amer Soc Clinical Investigation Inc, v. 6, n. 10, 17 p., 2021.
10.1172/jci.insight.147535
WOS:000653507400023
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Jci Insight
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 17
dc.publisher.none.fl_str_mv Amer Soc Clinical Investigation Inc
publisher.none.fl_str_mv Amer Soc Clinical Investigation Inc
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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