Proteomic characterization of the fibroin-based silk fibers produced by weaver ant Camponotus textor

Detalhes bibliográficos
Autor(a) principal: Pinto, José Roberto Aparecido dos Santos [UNESP]
Data de Publicação: 2022
Outros Autores: Esteves, Franciele Grego [UNESP], Tormena, Cláudio Francisco, Perez-Riverol, Amilcar [UNESP], Lasa, Alexis Musacchio, Bueno, Odair Correa [UNESP], Palma, Mario Sergio [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.jprot.2022.104579
http://hdl.handle.net/11449/240857
Resumo: The fibroin-based silk fibers of weaver ants are an alternative biomaterial to be investigated and explored for potential biomedical applications. In this context, the silk fibers from the nest of the weaver ant Camponotus textor was solubilized and fractionated by gel permeation. The different fractions were collected, pooled and submitted to analysis with a series of biochemical methods, nuclear magnetic resonance (NMR) spectroscopy, analytical proteomic strategies, and data treatment with bioinformatic tools to perform the structural characterization of the fibroin-based silk fibers produced by the ant. Our data demonstrated the identification of one fibroin proteoform in the ant silk fibers. The protein chracterized as a glycoprotein with MW around 40 kDa and presenting 66% (w/w) of total sugars attached to it through O-linked carbohydrates. The 3D of protein was modeled, revealing a structure predominantly constituted of coiled-coil secondary units in the whole model, featuring at least four superhelices (arrangement with multiple α-helices). The scientific outcomes reported herein may be relevant for the development of novel approaches for the synthetic or recombinant production of novel silk-based polymers for biomedical applications. Biological significance: The present investigation significantly expanded knowledge regarding to the fibroin-based silk fibers from weaver ants, contributing to improvements in our understanding of the properties and characteristics of these silk fibers. For example, as reported here, carbohydrates were detected in the ants' silk for the first time presenting the fibroin as a glycoprotein. Moreover, the 3D structure provided new insights into the secondary structures considering the whole model of the protein.
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spelling Proteomic characterization of the fibroin-based silk fibers produced by weaver ant Camponotus textorAnt silk proteinsCarbohydratesFibroinsLCMS-based proteomicsNMRThe fibroin-based silk fibers of weaver ants are an alternative biomaterial to be investigated and explored for potential biomedical applications. In this context, the silk fibers from the nest of the weaver ant Camponotus textor was solubilized and fractionated by gel permeation. The different fractions were collected, pooled and submitted to analysis with a series of biochemical methods, nuclear magnetic resonance (NMR) spectroscopy, analytical proteomic strategies, and data treatment with bioinformatic tools to perform the structural characterization of the fibroin-based silk fibers produced by the ant. Our data demonstrated the identification of one fibroin proteoform in the ant silk fibers. The protein chracterized as a glycoprotein with MW around 40 kDa and presenting 66% (w/w) of total sugars attached to it through O-linked carbohydrates. The 3D of protein was modeled, revealing a structure predominantly constituted of coiled-coil secondary units in the whole model, featuring at least four superhelices (arrangement with multiple α-helices). The scientific outcomes reported herein may be relevant for the development of novel approaches for the synthetic or recombinant production of novel silk-based polymers for biomedical applications. Biological significance: The present investigation significantly expanded knowledge regarding to the fibroin-based silk fibers from weaver ants, contributing to improvements in our understanding of the properties and characteristics of these silk fibers. For example, as reported here, carbohydrates were detected in the ants' silk for the first time presenting the fibroin as a glycoprotein. Moreover, the 3D structure provided new insights into the secondary structures considering the whole model of the protein.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Department of General and Applied Biology Institute of Biosciences of Rio Claro University of Sao Paulo State (UNESP), Rio ClaroInstitute of Chemistry University of Campinas (UNICAMP), CampinasBiomedical Research Division Center for Genetic Engineering and Biotechnology (CIGB)Department of General and Applied Biology Institute of Biosciences of Rio Claro University of Sao Paulo State (UNESP), Rio ClaroUniversidade Estadual Paulista (UNESP)Universidade Estadual de Campinas (UNICAMP)Center for Genetic Engineering and Biotechnology (CIGB)Pinto, José Roberto Aparecido dos Santos [UNESP]Esteves, Franciele Grego [UNESP]Tormena, Cláudio FranciscoPerez-Riverol, Amilcar [UNESP]Lasa, Alexis MusacchioBueno, Odair Correa [UNESP]Palma, Mario Sergio [UNESP]2023-03-01T20:35:51Z2023-03-01T20:35:51Z2022-06-15info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1016/j.jprot.2022.104579Journal of Proteomics, v. 261.1876-77371874-3919http://hdl.handle.net/11449/24085710.1016/j.jprot.2022.1045792-s2.0-85128453457Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Proteomicsinfo:eu-repo/semantics/openAccess2023-03-01T20:35:52Zoai:repositorio.unesp.br:11449/240857Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-05-23T20:00:18.441570Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Proteomic characterization of the fibroin-based silk fibers produced by weaver ant Camponotus textor
title Proteomic characterization of the fibroin-based silk fibers produced by weaver ant Camponotus textor
spellingShingle Proteomic characterization of the fibroin-based silk fibers produced by weaver ant Camponotus textor
Pinto, José Roberto Aparecido dos Santos [UNESP]
Ant silk proteins
Carbohydrates
Fibroins
LCMS-based proteomics
NMR
title_short Proteomic characterization of the fibroin-based silk fibers produced by weaver ant Camponotus textor
title_full Proteomic characterization of the fibroin-based silk fibers produced by weaver ant Camponotus textor
title_fullStr Proteomic characterization of the fibroin-based silk fibers produced by weaver ant Camponotus textor
title_full_unstemmed Proteomic characterization of the fibroin-based silk fibers produced by weaver ant Camponotus textor
title_sort Proteomic characterization of the fibroin-based silk fibers produced by weaver ant Camponotus textor
author Pinto, José Roberto Aparecido dos Santos [UNESP]
author_facet Pinto, José Roberto Aparecido dos Santos [UNESP]
Esteves, Franciele Grego [UNESP]
Tormena, Cláudio Francisco
Perez-Riverol, Amilcar [UNESP]
Lasa, Alexis Musacchio
Bueno, Odair Correa [UNESP]
Palma, Mario Sergio [UNESP]
author_role author
author2 Esteves, Franciele Grego [UNESP]
Tormena, Cláudio Francisco
Perez-Riverol, Amilcar [UNESP]
Lasa, Alexis Musacchio
Bueno, Odair Correa [UNESP]
Palma, Mario Sergio [UNESP]
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (UNESP)
Universidade Estadual de Campinas (UNICAMP)
Center for Genetic Engineering and Biotechnology (CIGB)
dc.contributor.author.fl_str_mv Pinto, José Roberto Aparecido dos Santos [UNESP]
Esteves, Franciele Grego [UNESP]
Tormena, Cláudio Francisco
Perez-Riverol, Amilcar [UNESP]
Lasa, Alexis Musacchio
Bueno, Odair Correa [UNESP]
Palma, Mario Sergio [UNESP]
dc.subject.por.fl_str_mv Ant silk proteins
Carbohydrates
Fibroins
LCMS-based proteomics
NMR
topic Ant silk proteins
Carbohydrates
Fibroins
LCMS-based proteomics
NMR
description The fibroin-based silk fibers of weaver ants are an alternative biomaterial to be investigated and explored for potential biomedical applications. In this context, the silk fibers from the nest of the weaver ant Camponotus textor was solubilized and fractionated by gel permeation. The different fractions were collected, pooled and submitted to analysis with a series of biochemical methods, nuclear magnetic resonance (NMR) spectroscopy, analytical proteomic strategies, and data treatment with bioinformatic tools to perform the structural characterization of the fibroin-based silk fibers produced by the ant. Our data demonstrated the identification of one fibroin proteoform in the ant silk fibers. The protein chracterized as a glycoprotein with MW around 40 kDa and presenting 66% (w/w) of total sugars attached to it through O-linked carbohydrates. The 3D of protein was modeled, revealing a structure predominantly constituted of coiled-coil secondary units in the whole model, featuring at least four superhelices (arrangement with multiple α-helices). The scientific outcomes reported herein may be relevant for the development of novel approaches for the synthetic or recombinant production of novel silk-based polymers for biomedical applications. Biological significance: The present investigation significantly expanded knowledge regarding to the fibroin-based silk fibers from weaver ants, contributing to improvements in our understanding of the properties and characteristics of these silk fibers. For example, as reported here, carbohydrates were detected in the ants' silk for the first time presenting the fibroin as a glycoprotein. Moreover, the 3D structure provided new insights into the secondary structures considering the whole model of the protein.
publishDate 2022
dc.date.none.fl_str_mv 2022-06-15
2023-03-01T20:35:51Z
2023-03-01T20:35:51Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.jprot.2022.104579
Journal of Proteomics, v. 261.
1876-7737
1874-3919
http://hdl.handle.net/11449/240857
10.1016/j.jprot.2022.104579
2-s2.0-85128453457
url http://dx.doi.org/10.1016/j.jprot.2022.104579
http://hdl.handle.net/11449/240857
identifier_str_mv Journal of Proteomics, v. 261.
1876-7737
1874-3919
10.1016/j.jprot.2022.104579
2-s2.0-85128453457
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Journal of Proteomics
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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